DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and Gata3

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_032117.1 Gene:Gata3 / 14462 MGIID:95663 Length:443 Species:Mus musculus


Alignment Length:622 Identity:204/622 - (32%)
Similarity:260/622 - (41%) Gaps:245/622 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LAHSHHSLSSGASSAGSSVGVGSALGGGGGSGLD-----TSDMSAFYALESNGHHRRYYPSYHQH 107
            ::|.|.::.:|........|:|.       |.::     |.::...:.::..|:|   .|||:.:
Mouse    11 VSHHHPAVLNGQHPDTHHPGLGH-------SYMEAQYPLTEEVDVLFNIDGQGNH---VPSYYGN 65

  Fly   108 T-----SRMPSTHASPQVCRPHFHTPLSPW------LTSEHKSFAPASAWSMGQFACPQEPQVEH 161
            :     .|.|.||...|||||.......||      |:|.|    .||.|::..|:   :..:.|
Mouse    66 SVRATVQRYPPTHHGSQVCRPPLLHGSLPWLDGGKALSSHH----TASPWNLSPFS---KTSIHH 123

  Fly   162 KLGQMG-------QSHQTTAAGQ---HSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATG 216
              |..|       .|..:.|||.   |.|.||||||||.:||                       
Mouse   124 --GSPGPLSVYPPASSSSLAAGHSSPHLFTFPPTPPKDVSPD----------------------- 163

  Fly   217 STSLTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQ 281
                          ||:   |..||:|                          |::|.:::..:.
Mouse   164 --------------PSL---STPGSAG--------------------------SARQDEKECLKY 185

  Fly   282 QQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGGSGGGGGGGSG 346
            |.|...|....|:.|..|.::.                                      ||.|.
Mouse   186 QVQLPDSMKLETSHSRGSMTTL--------------------------------------GGASS 212

  Fly   347 SGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGS 411
            |..:..::|..|         ....::.:|..||:                              
Mouse   213 SAHHPITTYPPY---------VPEYSSGLFPPSSL------------------------------ 238

  Fly   412 SSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVN 476
                  ||||   ..|.|..|                             |.|.|:|.|||||||
Mouse   239 ------LGGS---PTGFGCKS-----------------------------RPKARSSTEGRECVN 265

  Fly   477 CGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTT 541
            |||||||||||||||||||||||||:||||||||||||||||      |||:|||||||||:|||
Mouse   266 CGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL------SAARRAGTSCANCQTTT 324

  Fly   542 TTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHL 606
            ||||||||:|:||||||||||||||:|||||||||||||||||:||||||.|.:         |.
Mouse   325 TTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSSKSKKCKKV---------HD 380

  Fly   607 GMGDFKPLDPSKGFG-GGFSASMAQHGHLSSGLHPAH 642
            .:.||   ..|..|. ...|..|:...|:|...|.:|
Mouse   381 ALEDF---PKSSSFNPAALSRHMSSLSHISPFSHSSH 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 42/43 (98%)
ZnF_GATA 533..583 CDD:238123 45/49 (92%)
Gata3NP_032117.1 Interaction with TBX21. /evidence=ECO:0000269|PubMed:15662016 1..257 82/445 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 3/16 (19%)
PHA03377 <76..260 CDD:177614 69/373 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..180 21/102 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..214 6/58 (10%)
ZnF_GATA 262..312 CDD:238123 48/55 (87%)
Flexible linker. /evidence=ECO:0000250 288..316 25/33 (76%)
ZnF_GATA 316..366 CDD:238123 45/49 (92%)
YxKxHxxxRP 344..353 7/8 (88%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 412..443 1/3 (33%)

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