DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and C39B10.7

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001257107.1 Gene:C39B10.7 / 13222514 WormBaseID:WBGene00164973 Length:123 Species:Caenorhabditis elegans


Alignment Length:87 Identity:22/87 - (25%)
Similarity:35/87 - (40%) Gaps:24/87 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 TPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPS-IQNGSASGSSGSGTTH 248
            |..||::.||    |.::..       |.:.||:            || :...:.|||.|:.:|.
 Worm    49 TDEKDASGDS----PLDHAT-------QSSVGSS------------PSHVLQTTTSGSHGADSTI 90

  Fly   249 TSTPKQREGTASTTNSSSNSSS 270
            :||.............||:||:
 Worm    91 SSTTSLASPVTLPMTPSSDSST 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648
ZnF_GATA 473..517 CDD:238123
ZnF_GATA 529..578 CDD:214648
ZnF_GATA 533..583 CDD:238123
C39B10.7NP_001257107.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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