DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and zglp1

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_002939716.2 Gene:zglp1 / 100488683 XenbaseID:XB-GENE-22069453 Length:479 Species:Xenopus tropicalis


Alignment Length:433 Identity:89/433 - (20%)
Similarity:144/433 - (33%) Gaps:121/433 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 ATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQ 278
            |.|:...:.::|.....|:...||.............:.|:|:...|.:.:.....|.:|..:.|
 Frog    59 AVGNGPPSASNCEARDLPAGGVGSKRAKQYRAAVTRGSRKKRKNRCSESKAPIRCPSRRQVSRSQ 123

  Fly   279 QQQQQQQ---------------QQSS----------------------------------SNTTA 294
            :|:::.:               |:|:                                  .:|..
 Frog   124 KQREKMEYLIQTPPEPNILYLMQESAKFLPELENRVCDPSCSEEPRGVYGGLYVPSRKPPGSTLL 188

  Fly   295 SSNTSASSSAAAASLSAAVAASAATSSNGL--FDGTAQAYSSGGSGGGGG-----GGSGSGGYDT 352
            |:|.|:.:..|...|:.     .:|..:||  .||..:........|.|.     ||......:.
 Frog   189 STNHSSLNYNAMELLNL-----ISTKCSGLHKLDGDQEMVKEDTRVGVGEAKNLVGGMVKAKENG 248

  Fly   353 SSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHG 417
            |..|...|.|...|......... |..|:.:.|...|:..|                        
 Frog   249 SPTAEKEHIAIETQKDEERVPER-QDPSLKSIATEQSVPNA------------------------ 288

  Fly   418 LGGSVGGTAGMGSMSGNSGGA----GSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCG 478
               :|..|:|...|  |:|..    .||.|.|.....:....|..:....|.||.::..:.::  
 Frog   289 ---AVPCTSGKVLM--NAGDEQREDKSLEGVSALIKASLDQELCRRKTPRKQRTPSKSMQKLD-- 346

  Fly   479 ATSTPLWR-----------RDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAK---- 528
                |.::           ::..|.|...|..||.|...::.. ||.||||...||.|:::    
 Frog   347 ----PSFQGIEFQMHLSLEKESCGDYRLIATSLYSKRKTRHGS-IKSKRRLNSISLSSSSEDDQP 406

  Fly   529 ----RAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNV 567
                :....||:|||..|.|||....|.|:|||||:.||.:.|
 Frog   407 SVLTKQSKRCASCKTQKTPLWRDAEDGTPLCNACGIRYKKYGV 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 10/54 (19%)
ZnF_GATA 533..583 CDD:238123 19/35 (54%)
zglp1XP_002939716.2 GATA 416..450 CDD:425605 19/34 (56%)

Return to query results.
Submit another query.