DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and gata2

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_004914149.2 Gene:gata2 / 100487142 XenbaseID:XB-GENE-478165 Length:462 Species:Xenopus tropicalis


Alignment Length:656 Identity:208/656 - (31%)
Similarity:260/656 - (39%) Gaps:256/656 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SHHSLSSGASSAGSSVGVG------SALGGGGGSGLDTSDMSAFY-ALESNGH-------HRRYY 101
            :||::.:|....|...|:.      :.|       |...::..|: .|:|.|:       |.|..
 Frog    12 AHHAVLNGQHPDGHHPGLAHNYMEPTQL-------LPPDEVDVFFNHLDSQGNPYYANSAHARAR 69

  Fly   102 PSYHQHTSRMPSTHASPQVCRPH-FHTPLSPWLTSEHKSFAPA---SAWSMGQFA-CPQEP---- 157
            .||.|..:|:..:    |:|||| .|:|..|||.|...:.:.|   :.|::..|| .|..|    
 Frog    70 VSYSQAHARLTGS----QMCRPHLLHSPGLPWLESGKTALSAAHHHNPWTVSPFAKTPLHPAAAG 130

  Fly   158 -QVEHKLGQMG--QSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTS 219
             .:....|..|  .||    ...|.|.||||||||.:||                          
 Frog   131 GSLYPGTGSSGGPSSH----TSPHLFGFPPTPPKDVSPD-------------------------- 165

  Fly   220 LTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQ 284
                                                .|||::..|||........:.|....:..
 Frog   166 ------------------------------------PGTAASPPSSSRLEDKDSIKYQVSLSEGM 194

  Fly   285 QQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGGSGGGGGGGSGSGG 349
            :.:..|                                .|.:..||.            |:.|..
 Frog   195 KMEGGS--------------------------------PLRNSLAQM------------GTQSTH 215

  Fly   350 YDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSG 414
            :...:|.||..|.                                     |.:.||..|.||..|
 Frog   216 HPIPTYPSYVPAP-------------------------------------HDYSSGLFHPGSLLG 243

  Fly   415 LHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGA 479
                                 |.|.|.:....:.|.   :|.:..||.:.  ...||||||||||
 Frog   244 ---------------------GPASSFTPKQRSKSR---SCSERNPVSSS--FHLEGRECVNCGA 282

  Fly   480 TSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTL 544
            |:||||||||||||||||||||:||||||||||||||||      |||:||||.||||:||||||
 Frog   283 TATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL------SAARRAGTCCANCQTTTTTL 341

  Fly   545 WRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMG 609
            |||||:|:||||||||||||||||||||||||||||||||:|:||||.| .|..|          
 Frog   342 WRRNANGDPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKMSNKSKKNK-KGSEC---------- 395

  Fly   610 DFKPL-----DPSKGFGGGFSASMAQH----GHLSSGLHPAH----------------AHMHGSW 649
             |:.|     :.|..|.   :|::|.|    |||....|..|                .|.|.|.
 Frog   396 -FEELSKCMQEKSSPFS---AAALASHMGPMGHLGPFTHSGHILQTPTPIHPSSSLSFGHPHHSS 456

  Fly   650 YTGGMG 655
            ....||
 Frog   457 MVTAMG 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 44/46 (96%)
ZnF_GATA 473..517 CDD:238123 41/43 (95%)
ZnF_GATA 529..578 CDD:214648 44/48 (92%)
ZnF_GATA 533..583 CDD:238123 45/49 (92%)
gata2XP_004914149.2 ZnF_GATA 276..326 CDD:238123 47/55 (85%)
ZnF_GATA 331..380 CDD:238123 45/48 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8306
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 272 1.000 Inparanoid score I2925
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1240204at2759
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm49448
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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