DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and AT3G06480

DIOPT Version :10

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_187299.1 Gene:AT3G06480 / 819825 AraportID:AT3G06480 Length:1088 Species:Arabidopsis thaliana


Alignment Length:493 Identity:208/493 - (42%)
Similarity:299/493 - (60%) Gaps:50/493 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 LTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDML 295
            |.:..:..:|:|.:|:..||.|   :.:::|.:       ||.   ||.|..|||..... |::|
plant   397 LVRPHFVTSPDVPHLSPVEIYR---KQHEVTTT-------GEN---IPAPYITFESSGLP-PEIL 447

  Fly   296 EEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMI---HTEYQSTPRGTRGG 357
            .|:...||..|:|||:|.|||.||..|::.||:||:||||.:|:|..|   |....|     |.|
plant   448 RELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDS-----RNG 507

  Fly   358 ANVLVLAPTRELALQIEMEVKKY--SFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLNDL 420
            ..||:||||||||.||:.|..::  |.| :...|:|||..:..|:.:|||||:|::.|||||||:
plant   508 PTVLILAPTRELATQIQDEALRFGRSSR-ISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDI 571

  Fly   421 IMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKN 485
            :...:||...::.||||||||||||||||||||::.:|.|.|||:|.:||||..||::|...:.|
plant   572 LEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVN 636

  Fly   486 PIQVCVGSLD-LAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSEL 549
            |:||.:|.:| |||..::.|.:::: ..|:|...:...:::.....|:||||..|...|.|:..:
plant   637 PVQVNIGRVDELAANKAITQYVEVV-PQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSV 700

  Fly   550 TLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYV 614
            ... |....|||::.|.:|:..:...:||...:|:|||||:|||||:||..|||||||..:|:||
plant   701 GRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYV 764

  Fly   615 HRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKA------MKDKR 673
            ||:|||||||..|.:.:|||.:||..|.:||::|:.|.|:||.::.::|.|...      .:|:|
plant   765 HRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYSQDRR 829

  Fly   674 AA--------------EGGGFGGRGGRFGGGRG--GGR 695
            ..              .|||||||||.|.|..|  |||
plant   830 GMVNRFDSGGGGTRWDSGGGFGGRGGGFSGREGGFGGR 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 189/437 (43%)
AT3G06480NP_187299.1 WW 22..52 CDD:459800
DEAD-like_helicase_N 402..814 CDD:475120 188/433 (43%)
Blue background indicates that the domain is not in the aligned region.

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