DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and ddx17

DIOPT Version :9

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001016781.1 Gene:ddx17 / 549535 XenbaseID:XB-GENE-1000758 Length:609 Species:Xenopus tropicalis


Alignment Length:572 Identity:233/572 - (40%)
Similarity:324/572 - (56%) Gaps:91/572 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 RGQDRDNRDHGSNERYDGGGYDRYKGNSYEF-NPTSSESNKDNGDLTGIIDWEALNKASIAATAA 223
            ||...| ||.|.     |.|..|:.    :| ||                 .|.|.|       .
 Frog     2 RGSFMD-RDRGG-----GAGMSRFP----KFGNP-----------------GERLRK-------K 32

  Fly   224 RW--SKCPPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQ 286
            ||  |:.|...||||.|.||||.:|:.::|.:|.: .:||:..|..||          |::.|.|
 Frog    33 RWDLSELPKFEKNFYTEHPEVARMTQHDVEELRRK-KEITIRGVNCPK----------PIYGFHQ 86

  Fly   287 CFAEYPD-MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQST 350
              |.:|. :|:.:....|.:|:|||.|.:|:.|.|.||:||||||:|||||:|||.|:|..:|  
 Frog    87 --ANFPQYVLDVLIDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQ-- 147

  Fly   351 PRGTRG-GANVLVLAPTRELALQIEMEVKKY--SFRGMKAVCVYGGGNRNMQISDLERGAEIIIC 412
            |...|| |...||||||||||.|::.....|  |.| :|:.|:|||..:..||.|||||.||.|.
 Frog   148 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKSSR-LKSTCIYGGAPKGPQIRDLERGVEICIA 211

  Fly   413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRR 477
            |||||.|.:.|...::...||||||||||||||||||||||::..|||||||:|.|||||..||:
 Frog   212 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQ 276

  Fly   478 LAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTD-KIIIFCGRKVR 541
            ||:.::::.:|:.:|:|:|:|.|::.||:.:.::.......|....:.|:..: |.|||...|.|
 Frog   277 LAEDFLRDYVQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEEIMAEKENKTIIFVETKRR 341

  Fly   542 ADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDF 606
            .|||:..:..||:...||||::.|.:|:..:.:.::|...||:||||||||||:|||..|||||:
 Frog   342 CDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVINYDY 406

  Fly   607 PHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKAMKD 671
            |::.|:||||:|||.|:..:||:.:|||..:...|:||:::|:||.|.:..:|..:...      
 Frog   407 PNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELVKVLEEANQTINPKLMQLVDH------ 465

  Fly   672 KRAAEGGGFGGRG------------------------GRFGGGRGGGRRNFD 699
               ..|||.|||.                        |:.||.|.|...|.|
 Frog   466 ---GRGGGGGGRSRYRSIPTNNNPNMMYQEECNRRMHGKDGGRRDGRNNNRD 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH-I 92..150 CDD:238053
DEADc 288..489 CDD:238167 110/204 (54%)
DEXDc 298..505 CDD:214692 113/209 (54%)
Helicase_C 514..624 CDD:278689 50/110 (45%)
ddx17NP_001016781.1 PTZ00110 11..462 CDD:240273 215/499 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000439
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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