Protein Alignment CG7878 and Rs1

DIOPT Version :10

• Sequence 1: NP_649767.1
• Gene: CG7878 / 40959
• FlyBaseID: FBgn0037549
• Length: 703
• Species: Drosophila melanogaster
• Sequence 2: NP_651970.1
• Gene: Rs1 / 44087
• FlyBaseID: FBgn0021995
• Length: 782
• Species: Drosophila melanogaster
• Alignment Length: 606
• Identity: 174/606 - (28%)
• Similarity: 257/606 - (42%)
• Gaps: 111/606 - (18%)

  Fly   184 KGNSYEFNPTSSESNKDN-GDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVANLTK 247
            ||  :||..:..|.|:|. .||...:..:|..|.. ...|||      |.|....||........
  Fly    47 KG--FEFVSSVKEYNQDTWDDLMKYVKRKARTKTD-DKIAAR------LQKRGGAEAVAAEQSDG 102

  Fly   248 SEIE-----------RIRE----ENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLEE 297
            |||:           |:||    :..|.......|..|||            :..||:..:..|:
  Fly   103 SEIDLSEDELKHDNLRLREKKESKKKKKKAGEEDEEDEGE------------KMQFADTVEANEQ 155

  Fly   298 ITK----------------MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTE 346
            ||.                :|:..|:|||:...|:.|.|.|:.|.|.||||||.|::||.:....
  Fly   156 ITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL 220

  Fly   347 YQSTPRGTRGGANVLVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEII 410
            |:  |...:....||||.|||||..|:....|:. .|..:......||.:...|.:.|.:..:|:
  Fly   221 YR--PLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIV 283

  Fly   411 ICTPGRLNDLIM-ANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPG 474
            |.|||||.|.|. .....:.:|..|:|||||||||..|..|:::::......|||::.|||....
  Fly   284 IATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQ 348

  Fly   475 VRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRK 539
            |:.||...:..||:|.|.:....|.:..::.|::.||.......|.:.:...:..|..::|...|
  Fly   349 VKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTK 413

  Fly   540 VRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINY 604
            .:|..|...|.|.|.....:|||..|..|.:::...|...:.:|:|||||:|||||..:..|||:
  Fly   414 KQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINF 478

  Fly   605 DFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIE----------------------- 646
            ..|...|.|:||||||.||||.|.|:|....::..:.|::|:
  Fly   479 VMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKL 543

  Fly   647 ---------ILQEAEQE-----VPDELHNMARRF-----------------KAMKDKRAAEGGGF 680
                     ||.|.:.|     ...:|....|:.                 :|.||:.|...|..
  Fly   544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKDRLALTTGDE 608

  Fly   681 GGRGGRFGGGRGGGRRNFDQF 701
            ....|..|.|:..|:|...::
  Fly   609 DKASGGKGKGKTAGKRKRPEY 629

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG7878	NP_649767.1	KH_1	92..152	CDD:459630
		DEAD-like_helicase_N	174..663	CDD:475120	163/549 (30%)
Rs1	NP_651970.1	SrmB	156..576	CDD:440279	131/421 (31%)