DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and pths

DIOPT Version :10

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_610090.1 Gene:pths / 35379 FlyBaseID:FBgn0032919 Length:507 Species:Drosophila melanogaster


Alignment Length:502 Identity:159/502 - (31%)
Similarity:239/502 - (47%) Gaps:80/502 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 SEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLEE--------------- 297
            ||.|:..|:||.         |||::...:..     |.......|..||               
  Fly    23 SEEEQEDEDNNH---------KEGDSEAALSG-----EDDKGSEDDAAEEQKLTWKDLGLNEALC 73

  Fly   298 --ITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANV 360
              ..::.:..||.||.:|.|:.|||.|:||:|:||:|||.||.|| ::|...::..|     ...
  Fly    74 QACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALP-ILHALLENPQR-----YFA 132

  Fly   361 LVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLND-LIMA 423
            |||.||||||.||..:.:.. |..|:|...|.||.:...|...|.:...|||.|||||.| |...
  Fly   133 LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENM 197

  Fly   424 NVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQ 488
            ...::..|.|||:|||||:|:|.||.::.|::..:..:|:|.:.|||....|::|.::.:|:|::
  Fly   198 KGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVK 262

  Fly   489 VCVGSLDLAATHSVKQI------IKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSS 547
            |.|.:    ...:|:|:      |.:...|:...:.:.....|     ..:|||.........:.
  Fly   263 VEVSN----KYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN-----SFMIFCSTCNNTVKTAL 318

  Fly   548 ELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEE 612
            .|...|.....:||...|..|..|:...|:....||::||||||||||..:..|:|:|.|.:.::
  Fly   319 MLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKD 383

  Fly   613 YVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEIL---------QEAE----QEVPDELHNMAR 664
            |:||||||.||||.|.:|:..::.|..:.:.:..:|         :|.|    ||...|....|:
  Fly   384 YIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAK 448

  Fly   665 -RFKAMKDKRAA--EGG-------GFGGRGGR---FGGGRGGGRRNF 698
             ..|.::|.|..  .||       .|.|...|   .||..||||::|
  Fly   449 LELKDLEDTRGGHKRGGDTHDDSENFTGARKRMKPMGGTGGGGRKSF 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 143/452 (32%)
pthsNP_610090.1 SrmB 62..480 CDD:440279 138/432 (32%)
Blue background indicates that the domain is not in the aligned region.

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