DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and Hel25E

DIOPT Version :10

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_723089.1 Gene:Hel25E / 33781 FlyBaseID:FBgn0014189 Length:424 Species:Drosophila melanogaster


Alignment Length:400 Identity:120/400 - (30%)
Similarity:187/400 - (46%) Gaps:66/400 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRG 356
            |::|..|...||..||.:|.:..|..:.|.|::..|::|.|||..|:|..:     |........
  Fly    50 PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL-----QQLEPSDNN 109

  Fly   357 GANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQISDLERGA-EIIICTPGRLN 418
            ..:|||:..|||||.||..|.:::|  ...:|....:||.........|:.|. .|::.||||:.
  Fly   110 TCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRIL 174

  Fly   419 DLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD-----------RQTIMTSATWP 472
            .||....:::..:.:.||||.|:||:          .||:|.|           :|.:|.|||..
  Fly   175 ALIRNKKLNLKLLKHFVLDECDKMLE----------QLDMRRDVQEIFRSTPHGKQVMMFSATLS 229

  Fly   473 PGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQ-IIKLMEDDMDK----------FNTITSFVKNM 526
            ..:|.:.:.:|::|::|.|........|.::| .:.|.|::.:|          ||.:..|||::
  Fly   230 KDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSV 294

  Fly   527 SSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASR 591
            .             |...||..||...|....||....|.:|.......|....||||||::..|
  Fly   295 Q-------------RCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGR 346

  Fly   592 GLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAE---- 652
            |:|||.:..|.|||.|.:.:.|:|||.|.||.|.:|.:|:|.:.|:.|      :||.|.:    
  Fly   347 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA------KILNEVQDRFD 405

  Fly   653 ---QEVPDEL 659
               .|:|:|:
  Fly   406 VNISELPEEI 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 120/399 (30%)
Hel25ENP_723089.1 DEADc_DDX39 40..248 CDD:350708 63/212 (30%)
SF2_C_DEAD 259..388 CDD:350174 46/141 (33%)
Blue background indicates that the domain is not in the aligned region.

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