DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and Hel25E

DIOPT Version :9

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_723089.1 Gene:Hel25E / 33781 FlyBaseID:FBgn0014189 Length:424 Species:Drosophila melanogaster


Alignment Length:400 Identity:120/400 - (30%)
Similarity:187/400 - (46%) Gaps:66/400 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRG 356
            |::|..|...||..||.:|.:..|..:.|.|::..|::|.|||..|:|..:     |........
  Fly    50 PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL-----QQLEPSDNN 109

  Fly   357 GANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQISDLERGA-EIIICTPGRLN 418
            ..:|||:..|||||.||..|.:::|  ...:|....:||.........|:.|. .|::.||||:.
  Fly   110 TCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRIL 174

  Fly   419 DLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD-----------RQTIMTSATWP 472
            .||....:::..:.:.||||.|:||:          .||:|.|           :|.:|.|||..
  Fly   175 ALIRNKKLNLKLLKHFVLDECDKMLE----------QLDMRRDVQEIFRSTPHGKQVMMFSATLS 229

  Fly   473 PGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQ-IIKLMEDDMDK----------FNTITSFVKNM 526
            ..:|.:.:.:|::|::|.|........|.::| .:.|.|::.:|          ||.:..|||::
  Fly   230 KDIRPVCKKFMQDPMEVYV
DDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSV 294

  Fly   527 SSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASR 591
            .             |...||..||...|....||....|.:|.......|....||||||::..|
  Fly   295 Q-------------RCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGR 346

  Fly   592 GLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAE---- 652
            |:|||.:..|.|||.|.:.:.|:|||.|.||.|.:|.:|:|.:.|:.|      :||.|.:    
  Fly   347 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA------KILNEVQDRFD 405

  Fly   653 ---QEVPDEL 659
               .|:|:|:
  Fly   406 VNISELPEEI 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH-I 92..150 CDD:238053
DEADc 288..489 CDD:238167 62/210 (30%)
DEXDc 298..505 CDD:214692 64/221 (29%)
Helicase_C 514..624 CDD:278689 40/119 (34%)
Hel25ENP_723089.1 DEADc_DDX39 40..248 CDD:350708 63/212 (30%)
SF2_C_DEAD 259..388 CDD:350174 46/141 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451343
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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