DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and Hlc

DIOPT Version :9

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster


Alignment Length:437 Identity:114/437 - (26%)
Similarity:202/437 - (46%) Gaps:72/437 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGA 358
            :|:.:.::|:.:|:.|||.|.|:||:|.|::..|:||:|||..:.|| :|.....|....:....
  Fly    20 ILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALP-LIQKILNSKLNASEQYV 83

  Fly   359 NVLVLAPTRELALQ----IEMEVKKYSFRGMKAVCVYGGGNRNM-QISDLERGAEIIICTPGRLN 418
            :.:|||||:||..|    ||..|:... :.::...:....|..: |...|....:|::.||..|.
  Fly    84 SAVVLAPTKELCRQSRKVIEQLVESCG-KVVRVADIADSSNDTVTQRHALSESPDIVVATPANLL 147

  Fly   419 DLIMA-NVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSY 482
            ....| :|:|:..:..||:||||.:...|:|...::::..:.|..|.::.|||....|.|:....
  Fly   148 AYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLC 212

  Fly   483 MKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIF------CGR--- 538
            :.||:.:.:...:|.....:.. .:::.::.||...:.:.:|......|.|||      |.:   
  Fly   213 LNNPVTLKLEEPELVPQDQ
LSH-QRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRL 276

  Fly   539 -----KVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATD----------- 587
                 .:||..|:|||..:              .|...|:....|...|::|:|           
  Fly   277 FLEQFGIRACVLNSELPAN--------------IRIHTISQFNKGTYDIIIASDEHHMEKPGGKS 327

  Fly   588 --------------VASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDW 638
                          .||||:|.:.:.:|||:|||.::..|:||.|||.|...:|:.:||.:.::.
  Fly   328 ATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKES 392

  Fly   639 ----AMAKELIE--ILQEAEQEVPDELHNMAR----RFKAMKDKRAA 675
                ::.|:|.:  ..||.||.:.:....|..    |::|....|||
  Fly   393 KVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAA 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH-I 92..150 CDD:238053
DEADc 288..489 CDD:238167 60/200 (30%)
DEXDc 298..505 CDD:214692 60/212 (28%)
Helicase_C 514..624 CDD:278689 38/148 (26%)
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 60/201 (30%)
DEXDc 24..231 CDD:214692 60/208 (29%)
HELICc 234..386 CDD:238034 39/166 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451497
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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