DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and Ddx17

DIOPT Version :10

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001359065.1 Gene:Ddx17 / 315133 RGDID:1304945 Length:652 Species:Rattus norvegicus


Alignment Length:576 Identity:232/576 - (40%)
Similarity:330/576 - (57%) Gaps:87/576 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 GDRGQDRDNRDHGSNERYDGGGYDRYKGNSYEFNPTSSESNKDNGDLTGIIDWEALNKASIAATA 222
            |||.:|||.           ||:....|:..   |.....|..          |.|.|       
  Rat     7 GDRDRDRDR-----------GGFGARGGSGL---PPKKFGNPG----------ERLRK------- 40

  Fly   223 ARW--SKCPPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFE 285
            .:|  |:.|...||||.|.||||.||..|::.:|.: .:|||      :.|:.   .|.||:.|.
  Rat    41 KKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRK-KEITV------RGGDV---CPKPVFAFH 95

  Fly   286 QCFAEYPD-MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQS 349
            .  |.:|. :::.:....|::|:|||.|.:|:.|.|.||:||||||:|||||:|||.::|..:| 
  Rat    96 H--ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ- 157

  Fly   350 TPRGTRG-GANVLVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEIIIC 412
             |...|| |...||||||||||.|::.....| ....:|:.|:|||..:..||.|||||.||.|.
  Rat   158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIA 221

  Fly   413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRR 477
            |||||.|.:.:...::...||||||||||||||||||||||::..|||||||:|.|||||..||:
  Rat   222 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQ 286

  Fly   478 LAQSYMKNPIQVCVGSLDLAATHSVKQIIKL-MEDDMDKFNTITSFVKNM--SSTDKIIIFCGRK 539
            ||:.::::..|:.||:|:|:|.|::.||:.: ||.:.|  :.:...::.:  ...:|.|||...|
  Rat   287 LAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKD--HKLIQLMEEIMAEKENKTIIFVETK 349

  Fly   540 VRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINY 604
            .|.|||:..:..||:...||||::.|.:|:..:.:.:||...||:||||||||||:||:..||||
  Rat   350 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINY 414

  Fly   605 DFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKAM 669
            |:|::.|:||||:|||.|:..:||:.:|||..:...|:|||::|:||.|.:..:|..:.      
  Rat   415 DYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLV------ 473

  Fly   670 KDKRAAEGGGFGGRGG-----------------------RFGGGRGGGRRNFDQFQ 702
             |.|.  |||.||:||                       |..|.:.||||:...::
  Rat   474 -DHRG--GGGGGGKGGRSRYRTTSSANNPNLMYQDECDRRLRGVKDGGRRDSTSYR 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 211/496 (43%)
Ddx17NP_001359065.1 DEAD-like_helicase_N 32..502 CDD:475120 216/511 (42%)
Blue background indicates that the domain is not in the aligned region.

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