DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7878 and dbp3

DIOPT Version :10

Sequence 1:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_596388.2 Gene:dbp3 / 2540213 PomBaseID:SPBC17D1.06 Length:529 Species:Schizosaccharomyces pombe


Alignment Length:493 Identity:193/493 - (39%)
Similarity:281/493 - (56%) Gaps:71/493 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 LTKNFYKEAPEVANLTKSE-IERIREENNKI--------------------------TVSYVFEP 268
            ::|...|::.:..:.||.| ||...||..||                          .:|:. :|
pombe    45 ISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHNDEEAYDRYIKKHNISFA-DP 108

  Fly   269 KEGETSPPIPNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGK 333
            |..|...||    ..|::  .:....|.|..| .:.:|:|||:..||.||.|.|::|||:||:||
pombe   109 KSSENLLPI----LQFDE--LDVSAKLREGLK-NYKEPTPIQAATWPYLLAGRDVVGIAETGSGK 166

  Fly   334 TLAFLLPGMIH----TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRG--MKAVCVYG 392
            |:||.:|.:.:    ::.:|.||       |||::||||||:|....:... .:|  :|||.|||
pombe   167 TVAFGIPALQYLNGLSDNKSVPR-------VLVVSPTRELAIQTYENLNSL-IQGTNLKAVVVYG 223

  Fly   393 GGNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLD 457
            |..::.| :...:.|.:||.|||||.|||....||.|.:.||||||||||||.|||..||.: :.
pombe   224 GAPKSEQ-ARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNI-IS 286

  Fly   458 IRPD------RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKF 516
            ..||      |||:..|||||..||.||.:::|:|:::.:||.:|||:.::.||:::::|...|.
pombe   287 HTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKE 351

  Fly   517 NTITSFV-KNMSS---TDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKS 577
            ..:.:.: |::||   .|||:||...|..|..:...|... :....|||:..|..|.||:.|.||
pombe   352 RMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKS 415

  Fly   578 GVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAK 642
            |...:|||||||:|||||..:..|||..||..||:||||:||||||..:||:|:|||.:|.:.|.
pombe   416 GKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAG 480

  Fly   643 ELIEILQEAEQEVPDELHNMARRFK---AMKDKRAAEG 677
            ||:.:|::|:|::|:.|      ||   |:|.|..|.|
pombe   481 ELVNVLRQAKQDIPEGL------FKFGTAVKPKLNAYG 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 186/474 (39%)
dbp3NP_596388.2 SrmB 120..495 CDD:440279 167/388 (43%)
Blue background indicates that the domain is not in the aligned region.

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