DRSC/TRiP Functional Genomics Resources

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Protein Alignment puc and ynbD

DIOPT Version :10

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_415929.1 Gene:ynbD / 945985 ECOCYCID:G6730 Length:430 Species:Escherichia coli


Alignment Length:172 Identity:43/172 - (25%)
Similarity:70/172 - (40%) Gaps:41/172 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 STAMNGGGRTPALTRSCSSPAVYDI-----------------ETHPASPVFPHLLLGNGRDADDP 152
            :|..:..|:.|        ||||.:                 ...|.|.:...:.||     ..|
E. coli   261 TTGKDSQGKLP--------PAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLG-----AFP 312

  Fly   153 SSVGA-NCVLNVTCQSPNESHLQGLKYMQIPASD--TPHQNIKQYFQEAYDFIEDARKTGSRVLL 214
            ..:.| |.||:||.:.|.....:...|..:|..|  .|.:.   ..::|...:|..|:....||:
E. coli   313 RHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEG---ELRQAVAMLETLREEQGSVLV 374

  Fly   215 HCHAGISRSATIAIAYVMRY---KSLSLLEAYKLVKVARPII 253
            ||..|:||||.:..|:::.|   |:::  ||...::..||.|
E. coli   375 HCALGLSRSALVVAAWLLCYGHCKTVN--EAISYIRARRPQI 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 PTP_DSP_cys 135..281 CDD:475123 35/125 (28%)
ynbDNP_415929.1 PAP2_Aur1_like 47..197 CDD:239481
DSP_bac 295..429 CDD:350376 36/130 (28%)
Blue background indicates that the domain is not in the aligned region.

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