DRSC/TRiP Functional Genomics Resources

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Protein Alignment puc and LSF1

DIOPT Version :10

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_566139.1 Gene:LSF1 / 821127 AraportID:AT3G01510 Length:591 Species:Arabidopsis thaliana


Alignment Length:126 Identity:31/126 - (24%)
Similarity:48/126 - (38%) Gaps:20/126 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 DADDPSSVGANCVLN-----------VTCQSPNESHLQGLKYMQI--PASDTPHQNIKQYFQEAY 199
            |.::.|..|...:||           :..||.|:: .|..:.:.|  |..|....::::......
plant   310 DVENLSEAGITAILNFQGGTEAQNWGIDSQSINDA-CQKSEVLMINYPIKDADSFDLRKKLPLCV 373

  Fly   200 DFIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLV------KVARPIIS 254
            ..:....|...||.:.|..|..||:...|||:......||..||..|      |..||.|:
plant   374 GLLLRLLKKNHRVFVTCTTGFDRSSACVIAYLHWMTDTSLHAAYSFVTGLHACKPDRPAIA 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 PTP_DSP_cys 135..281 CDD:475123 31/126 (25%)
LSF1NP_566139.1 PDZ_canonical 78..>120 CDD:483948
DSP_laforin-like 290..435 CDD:350375 31/126 (25%)
E_set_AMPKbeta_like_N 456..536 CDD:199889
Blue background indicates that the domain is not in the aligned region.

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