DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puc and ssh1b

DIOPT Version :9

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:XP_021332184.1 Gene:ssh1b / 567479 ZFINID:ZDB-GENE-030131-5909 Length:962 Species:Danio rerio


Alignment Length:555 Identity:124/555 - (22%)
Similarity:199/555 - (35%) Gaps:148/555 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 CVNRETQSSSNNNSNNTTTATSTARNNN--------SHNGRCECDGDGDSVSHIQSEMKMRIKRE 58
            |::.|   .|..|..|..|...|.|.::        :...|.||                .||.:
Zfish   212 CISSE---QSCINEWNAMTDLETTRPDSPVMFSDQPTERERTEC----------------MIKTK 257

  Fly    59 APCLLLFMPIQNTNNNNRIGANQKDYPNKRSRENLACD--EVTSTTSSSTAMNGGGRTPALTRSC 121
            ...|::|..::|..:        |:..|: ..::::|:  |......:...:..|          
Zfish   258 LRNLMMFQDLENITS--------KEIRNE-LEQHMSCNLREYKEFIDNEMLLILG---------- 303

  Fly   122 SSPAVYDIETHPASPVFPHLLLG---NGRDADDPSSVGANCVLNVTCQSPNESHLQG-LKYMQIP 182
                    :...|:.:|.||.||   |..:.::....|...:||||.:..|  ...| ..|..:.
Zfish   304 --------QMDKATLIFDHLYLGSEWNASNLEELQDSGVGYILNVTREIDN--FFPGTFCYCNVR 358

  Fly   183 ASDTPHQNIKQYFQEAYDFIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLVK 247
            ..|....::..::.|.|:||..|:|..|:.|:||..|:||||:..|||.|:....||.:||..||
Zfish   359 VYDDETTDLLAHWNETYNFIVRAKKNDSKCLVHCKMGVSRSASTVIAYAMKEYGWSLEKAYNFVK 423

  Fly   248 VARPIISPNLNFMGQLLELEQNLRKSGVLAPATPHLN---SPSNPSSSSVGLSTQSSQLVEQPE- 308
            ..|.|..||..||.||.|.|      |:|..:....|   .|.....|..||...::...:.|: 
Zfish   424 QKRNIAQPNPAFMKQLAEYE------GILDASKQRHNKLWKPDGDEYSPEGLQASAASGDQTPQF 482

  Fly   309 -----EEEKREQRERGKSKS---DSEAMDEDGFDYDDVDSGSGSLAGSNCSSRLTSPPITP---- 361
                 ::|:|.....|.|.|   ..|..|...::| .....|.:...|..|:.:..||:..    
Zfish   483 SLLHPDQEERAWGHGGASASPCCGEEPTDHLNYNY-YFRRLSDTALDSEPSTPVRGPPLLGMERV 546

  Fly   362 -------------DDEA--------PSTSAAA------------------SSVSELDSPSSTSSS 387
                         |||.        |....||                  |:|.|.|...:....
Zfish   547 FIEIEDVERDALLDDEGFPMAHLGLPGEGTAAQTCGRLEPLEDMRLRLEFSTVEEEDEEEAQKEE 611

  Fly   388 SGICSLLQSTSSSVSPRAISKPNLL-----SPTRQLALFKRNSPAKLRLDLESSYAPASPIPNTM 447
            :.:.:|.:...:.....:::..|..     :.:.:|| .||:.|        |.:..::.|.|  
Zfish   612 AEMAALARGEETPREDESLANSNRFNNENANNSNRLA-GKRSCP--------SGFDDSASIGN-- 665

  Fly   448 PWLSVPSTPVCEEA---PD----SRINHVASNLTR 475
            |:...||...|.:.   |.    .|.|| ..||.|
Zfish   666 PFKVKPSYQSCRDCLRLPSGRRCERRNH-RLNLPR 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 DSPc 133..267 CDD:238073 50/137 (36%)
CDC14 <193..272 CDD:225297 35/78 (45%)
ssh1bXP_021332184.1 SSH-N 3..236 CDD:212166 8/26 (31%)
DEK_C 244..302 CDD:312337 12/82 (15%)
DSPc 307..443 CDD:238073 50/137 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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