DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puc and ssh

DIOPT Version :10

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster


Alignment Length:339 Identity:86/339 - (25%)
Similarity:141/339 - (41%) Gaps:57/339 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 VFPHLLLG---NGRDADDPSSVGANCVLNVTCQSPNESHLQG-LKYMQIPASDTPHQNIKQYFQE 197
            :|.|:.||   |..:.::....|...:||||.:..|  ...| .:|..:...|....|:.:|:.:
  Fly   388 IFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDN--FFPGTFEYFNVRVYDDEKTNLLKYWDD 450

  Fly   198 AYDFIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLVKVARPIISPNLNFMGQ 262
            .:.:|..|:..||:||:||..|:||||::.|||.|:.......:|.:.||..|..|.||.||:.|
  Fly   451 TFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQ 515

  Fly   263 L------LELEQNLRKSGVLAPATPHLNSPSNPSSSSVGL-STQSSQLVEQPEEEEKREQRERGK 320
            |      |:..:|..|              ...|.|...| ||:.::|:...|.....:...:.|
  Fly   516 LETYSGMLDAMKNKEK--------------LQRSKSETNLKSTKDARLLPGSEPTPLIQALNQAK 566

  Fly   321 SKSDSEA-MDEDGFDYDDVDSGSGSLAGSNCSSRLTSPPITPDDEAPSTSAAASSVSELDSPSST 384
            |||..|| :..||.:.|.......|:|..:....:.....|    :|.|..|..:..:       
  Fly   567 SKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSST----SPKTQTAVVTKQQ------- 620

  Fly   385 SSSSGICSLLQSTSSSVSPRAISKP-----NLLSPTRQLALFKRNSPAKLRL---DLESSYA--- 438
              |..:.:|....|.:..|:.:..|     |......|:...::::|..:|.   |||:..|   
  Fly   621 --SQSMENLTPERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQL 683

  Fly   439 PASPIPNTMPWLSV 452
            |..|:     |.|:
  Fly   684 PQQPV-----WTSL 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 PTP_DSP_cys 135..281 CDD:475123 47/153 (31%)
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 326..379 CDD:462592
DSP_slingshot 385..523 CDD:350363 44/136 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.