DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puc and ssh

DIOPT Version :9

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster


Alignment Length:339 Identity:86/339 - (25%)
Similarity:141/339 - (41%) Gaps:57/339 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 VFPHLLLG---NGRDADDPSSVGANCVLNVTCQSPNESHLQG-LKYMQIPASDTPHQNIKQYFQE 197
            :|.|:.||   |..:.::....|...:||||.:..|  ...| .:|..:...|....|:.:|:.:
  Fly   388 IFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDN--FFPGTFEYFNVRVYDDEKTNLLKYWDD 450

  Fly   198 AYDFIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLVKVARPIISPNLNFMGQ 262
            .:.:|..|:..||:||:||..|:||||::.|||.|:.......:|.:.||..|..|.||.||:.|
  Fly   451 TFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQ 515

  Fly   263 L------LELEQNLRKSGVLAPATPHLNSPSNPSSSSVGL-STQSSQLVEQPEEEEKREQRERGK 320
            |      |:..:|..|              ...|.|...| ||:.::|:...|.....:...:.|
  Fly   516 LETYSGMLDAMKNKEK--------------LQRSKSETNLKSTKDARLLPGSEPTPLIQALNQAK 566

  Fly   321 SKSDSEA-MDEDGFDYDDVDSGSGSLAGSNCSSRLTSPPITPDDEAPSTSAAASSVSELDSPSST 384
            |||..|| :..||.:.|.......|:|..:....:.....|    :|.|..|..:..:       
  Fly   567 SKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSST----SPKTQTAVVTKQQ------- 620

  Fly   385 SSSSGICSLLQSTSSSVSPRAISKP-----NLLSPTRQLALFKRNSPAKLRL---DLESSYA--- 438
              |..:.:|....|.:..|:.:..|     |......|:...::::|..:|.   |||:..|   
  Fly   621 --SQSMENLTPERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQL 683

  Fly   439 PASPIPNTMPWLSV 452
            |..|:     |.|:
  Fly   684 PQQPV-----WTSL 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 DSPc 133..267 CDD:238073 45/139 (32%)
CDC14 <193..272 CDD:225297 31/84 (37%)
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 328..379 CDD:285919
DSPc 385..519 CDD:238073 44/132 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462482
Domainoid 1 1.000 44 1.000 Domainoid score I728
eggNOG 1 0.900 - - E2759_KOG1716
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 00.000 Not matched by this tool.
65.780

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