DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puc and ssh2a

DIOPT Version :9

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:XP_005157728.1 Gene:ssh2a / 325085 ZFINID:ZDB-GENE-030131-3810 Length:1175 Species:Danio rerio


Alignment Length:535 Identity:113/535 - (21%)
Similarity:189/535 - (35%) Gaps:157/535 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 CDGDGDSVSHIQSEMKMRIKREAPCLLLFMPIQNTNNNNRIGANQKDYPNKRSRENLACDEVTST 101
            |..:.:::..:||.     :.::|.|...:|.:.......|....::...::..||:...|:.:.
Zfish   228 CINEWNAMQDVQSH-----RADSPVLFTDVPTERERTERLIKTRLREIMMQKDLENVTSKEIRTE 287

  Fly   102 TSSSTAMN-------GGGRTPALTRSCSSPAVYDIETHPASPVFPHLLLG---NGRDADDPSSVG 156
            .......|       .......:.....||          :.:|.|:.||   |..:.::..:.|
Zfish   288 LEMQMVCNLREFKEFIDNEMIVILGQMDSP----------TEIFDHVYLGSEWNASNLEELQNSG 342

  Fly   157 ANCVLNVTCQSPNESHLQGL-KYMQIPASDTPHQNIKQYFQEAYDFIEDARKTGSRVLLHCHAGI 220
            ...:||||.:..|  ...|| :|..|...|....|:.:|:.:.|.||..|:|.|.:.|:||..|:
Zfish   343 VRYILNVTREIDN--FFPGLFEYHNIRVYDEEATNLLEYWNDTYKFISKAKKAGVKCLVHCKMGV 405

  Fly   221 SRSATIAIAYVMRYKSLSLLEAYKLVKVARPIISPNLNFMGQLLELEQNLRKSGVLAPATPHLNS 285
            ||||:..|||.|:.....|..|:..||..|.:..||.:||.||.|.:      |:|..:      
Zfish   406 SRSASTVIAYAMKEYGWDLDRAFDHVKERRSVTKPNPSFMKQLEEYQ------GILLAS------ 458

  Fly   286 PSNPSSSSVGLSTQSSQLVEQPEEEEKREQRERGKSKSDSEAMD--------EDGFDYDDVDSGS 342
                                      |:...:..:|.||::..|        ....|..|..:.:
Zfish   459 --------------------------KQRHNKLWRSHSDTDLSDGHEPLCKTPRSLDRSDPHNNN 497

  Fly   343 GSLA-----GSNCSSRLTSP-PI----------TPDDEA-------PSTSAAASSVSELDSPSST 384
            |||:     |......||:| |:          ||...|       |.:...|::|.     |..
Zfish   498 GSLSIQQMLGIAVLESLTNPRPVACNTHKKSGETPSKLAHEDLFLLPQSRQRAATVG-----SKQ 557

  Fly   385 SSSSGICSLLQSTSSSVSPRAI---------------SKPNL-----------------LSP--- 414
            .:|:.|.::.:..|....|.|:               :.|||                 |||   
Zfish   558 RNSTLILAVREPVSHRHPPPALHVLDSPLLPEERGGDTTPNLGAQSSHQVPEPKTDCVELSPDLP 622

  Fly   415 --------TRQLALFKRNSPAKLRLDLESSYAPASPIPNTMPWLSVPSTPVCE----------EA 461
                    ::.|.|...::.:|...:|.||..|.:..|:..|  :||.....:          ||
Zfish   623 DQNDSYQVSQSLELCLESAVSKDEGNLPSSSTPEADSPSEAP--AVPELVSSDDNNNPNAADLEA 685

  Fly   462 PDSRINHVASNLTRD 476
            .|...:...|.|:.|
Zfish   686 ADDCTDASVSRLSTD 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 DSPc 133..267 CDD:238073 48/137 (35%)
CDC14 <193..272 CDD:225297 31/78 (40%)
ssh2aXP_005157728.1 SSH-N 12..245 CDD:212166 3/21 (14%)
DEK_C 260..311 CDD:285919 5/50 (10%)
DSPc 317..452 CDD:238073 49/146 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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