DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment puc and ssh1

DIOPT Version :9

Sequence 1:NP_524273.1 Gene:puc / 40958 FlyBaseID:FBgn0243512 Length:476 Species:Drosophila melanogaster
Sequence 2:XP_002932127.2 Gene:ssh1 / 100495893 XenbaseID:XB-GENE-6041963 Length:975 Species:Xenopus tropicalis


Alignment Length:511 Identity:111/511 - (21%)
Similarity:180/511 - (35%) Gaps:145/511 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 CDGDGDSVSHIQSEMKMRIKREAPCLLLFMPIQNTNNNNRIGANQKDYPNKRSRENLACDEVTST 101
            |..:.:::..::|     .:.::|.:.:..|.:.......|....:.....|..||:.|.|:.:.
 Frog   218 CINEWNTMQDLES-----ARADSPIIFMEKPSEGERTEWVIRQTLRSIMMTRDLENVTCKEIRNE 277

  Fly   102 TSSSTAMNGGGRTPALTRSCSSPAVYDI----------ETHPASPVFPHLLLG---NGRDADDPS 153
            .....             ||:.....:.          :...||.:|.|:.||   |..:.::..
 Frog   278 LEEKL-------------SCNLKEYKEYIDNEMLLILGQMDKASLIFDHVYLGSEWNASNLEELH 329

  Fly   154 SVGANCVLNVTCQSPNESHLQGL-KYMQIPASDTPHQNIKQYFQEAYDFIEDARKTGSRVLLHCH 217
            |.|...:||||.:..|  ...|: .|..|...|....::..::.:||.||..|:|..|:.|:||.
 Frog   330 STGVGYILNVTREIDN--FFPGMFAYHNIRVYDEETTDLLSHWNDAYHFITKAKKNKSKCLVHCK 392

  Fly   218 AGISRSATIAIAYVMRYKSLSLLEAYKLVKVARPIISPNLNFMGQLLELE--------------- 267
            .|:||||:..|||.|:....|:.:||..||..|.:..||..||.||||.|               
 Frog   393 MGVSRSASTVIAYAMKENGWSMEKAYNFVKQKRSVTRPNAGFMRQLLEYEGILDASKQRHNKLWM 457

  Fly   268 ------------------QNLRKSGVLAPATP------HLNSPSNPSSSSVGLSTQSSQLVEQPE 308
                              ..|.:..|.|...|      |||:|              .:|:|...
 Frog   458 PPIFPTSYGQDTLETEFNYGLNEDYVKAETLPESYCLRHLNNP--------------CELIEPLS 508

  Fly   309 EEEKREQRER---------GKSKSDSEAMDED---GFDYDDV--------DSGSGSLAGSNCSSR 353
            .|.:.|:.||         |..:.:|..::.:   ..|::|:        |.|..........|.
 Frog   509 VELEVEELERDALLGDTDVGTIRQNSPFLEGEIRKKLDFEDLLSPKRYKDDFGPAERHMKEGDSH 573

  Fly   354 LTSPPITPD-DEAPSTSAAASSVSELDSPSSTSSSS--GICSLLQSTSSSVSPRAISKPNLLSPT 415
            :   |..|| ||.......:|:.|:...|..|...:  ||.|.::....|.:.....||:     
 Frog   574 I---PFVPDYDEQVYKENLSSNSSKRSCPKDTEEDAIFGILSKVKPPYPSCTDCVYPKPS----- 630

  Fly   416 RQLALFKRNSPAKLRLDLESSYAPASPIPNTMPWLSVPSTPVCEEAPDSRINHVAS 471
                    ..|.|               |...|.|:  ||.||.:  .:.:.|:.|
 Frog   631 --------EEPQK---------------PYCEPALN--STTVCTQ--PTLLQHMTS 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pucNP_524273.1 DSPc 133..267 CDD:238073 51/137 (37%)
CDC14 <193..272 CDD:225297 35/111 (32%)
ssh1XP_002932127.2 SSH-N 3..235 CDD:212166 2/21 (10%)
DEK_C 249..301 CDD:400903 8/64 (13%)
DSP_slingshot_1 304..447 CDD:350418 52/144 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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