DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7910 and GatA

DIOPT Version :9

Sequence 1:NP_001287222.1 Gene:CG7910 / 40956 FlyBaseID:FBgn0037547 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_650775.2 Gene:GatA / 42283 FlyBaseID:FBgn0260779 Length:508 Species:Drosophila melanogaster


Alignment Length:498 Identity:118/498 - (23%)
Similarity:190/498 - (38%) Gaps:102/498 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SLNAVVEDRFEAALQDAKLADQ--FIEKASSEFDRVALYTKYPILGVPFTVKESCGLKGLSFAVG 139
            :|||.|....|.|.|.|:.|:|  .:.:..|:.|           ||...:|::...|.:.....
  Fly    39 TLNAFVRLTPEQAGQQAQDAEQRYKLRQPISDLD-----------GVTIAIKDNFCTKDVHTTCA 92

  Fly   140 SLARKNMKAPQDGDVVELVRAAGGIPLLVSANPEFCMSFETSNNIQGRCLNPY------DLQRTS 198
            |...::...|.|..|...::.||.:.|..:...:|.|...|.:::.|...|.:      |..|.:
  Fly    93 SRMLQDFVPPYDATVCSRLKQAGAVILGKTNMDQFAMGAGTVDSLYGPTKNIWSEDLNKDHWRIA 157

  Fly   199 AGSSGGEASLNGCGATTFGVGSDISGSIRLPALFCGVFGHKPTGGLTSVKGHFPYSLTDKKFSEM 263
            .|||||.||....|.....:|||..||.|.||.:|||.|.|||.||.|..|..|.      .:.|
  Fly   158 GGSSGGSASAVAAGLCYAAIGSDTGGSTRNPASYCGVVGLKPTYGLVSRHGLIPL------VNSM 216

  Fly   264 LQIGPITRFARDLPLLLEIMAG-DKKHKLKMSEP----------------VALKDMKVYYAFGYS 311
            ...|...|...|...:|..:|| ||.....:.:|                |.:...|.|:..|.|
  Fly   217 DVPGIFARSVSDCVAVLNTVAGPDKLDSTTIRQPFTRLHLPEVGQIDLSTVRIGIPKEYHCHGLS 281

  Fly   312 GFNCLTHPVVDFDIKLAITKAVTCLERGGVQSKKLDLK---------FLRNSLEIALVSLVDLKG 367
            .           ::....:|....||..|...:::.|.         .:.|..|:| .::....|
  Fly   282 A-----------EVLETWSKVADLLECSGASVRQVSLPNTAASIFVYTILNQCEVA-SNMARYDG 334

  Fly   368 LP--SIVTQRADRDPSMRLLMVELFNSIIGHSIFTKEAMVLEVMKRFNGLMATGNMEEYRVEAQK 430
            :.  ...|.....:....|...|.||.::...|.|.           |.|:...|.:.|..:|.:
  Fly   335 IEYGHRATDERSTEQLYALSRAEGFNDVVKTRILTG-----------NFLLLKKNYDHYFEKALR 388

  Fly   431 IKSHLNQLLGTQ--------------GVLIMPTFHTSALCFHTSLLNVTGIDNLLL-------FN 474
            ::    :|:...              .:|:.||..|.| ..:....::|..|...:       .|
  Fly   389 VR----RLIAEDFARVFDSSAKEERVDILLTPTTLTEA-PLYKDFASLTNRDQCAVQDFCTQPAN 448

  Fly   475 ILGLPATHVPMGTNQRGMPIGLQVVAAQYQDKLCLKVAAELEA 517
            :.|:||..:|:..:|.|:|:.||:::....::|.|.||..:||
  Fly   449 MAGIPAVSIPIRLSQAGLPLSLQLMSNSLNEQLLLTVARWIEA 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7910NP_001287222.1 GatA 41..527 CDD:223232 118/498 (24%)
PRK07488 41..525 CDD:236030 118/498 (24%)
GatANP_650775.2 PRK07488 8..491 CDD:236030 116/496 (23%)
gatA 18..490 CDD:234572 116/495 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440859
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0154
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.