DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-B and gar-3

DIOPT Version :9

Sequence 1:NP_649764.1 Gene:mAChR-B / 40955 FlyBaseID:FBgn0037546 Length:1019 Species:Drosophila melanogaster
Sequence 2:NP_001024236.1 Gene:gar-3 / 179962 WormBaseID:WBGene00001519 Length:611 Species:Caenorhabditis elegans


Alignment Length:943 Identity:186/943 - (19%)
Similarity:308/943 - (32%) Gaps:396/943 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LLLAVRNQSSDGG-----STMSGSS-------SDSEILGPVLPPFALWQTILIAICLAICIILTV 148
            :|:.|.|.|::..     :|.|.|:       |.|.:||..      .:.::|.:..|:..::|.
 Worm    22 MLVKVINTSAENATKTAIATSSTSTPSFVDTYSTSSLLGEE------GRMVMIVVIGAMFALVTS 80

  Fly   149 GGNILVLLAFIVDRNIRQPSNYFIASLAATDMLIGTVSMPFYTIYVLKGYWDLGPMLCDLWLSVD 213
            .||::|:::|.:|:.::..||||:.|||..|:.||.:|:|.:|.|.....||||..:|..||.:|
 Worm    81 LGNLMVMVSFKIDKQLQTISNYFLFSLAVADIAIGVISIPMFTYYTAIQKWDLGYTMCQFWLCID 145

  Fly   214 YTVCLVSQYTVLLITIDRYCSVKIAAKYRSWRTRTRVIYMVTITWIIPALLFFISIFGWEHFTGK 278
            |.:...|...:|||:.|||.||.....||..||..:.:.|:..|:||..:|:...|..|.:..||
 Worm   146 YLMSNASVLNLLLISFDRYFSVTRPLSYRPRRTTKKALTMIACTYIISLILWPPWIISWPYIEGK 210

  Fly   279 RDLLPGQCAVQFLK-DPIFNTALIIGYYWTTLIVLFVLYAGIYKTAYDMQKRSEAKQRKMQSMVA 342
            ....||.|.||||: :|.......:..::..:.::.:||..:|   ::.|||.            
 Worm   211 FTAEPGTCVVQFLQTNPYVTVGTAVAAFYLPVTIMCILYTRVY---WETQKRQ------------ 260

  Fly   343 LSAGAMSGMAGHAAGIGVIEEKILKTKVELAGDQTDLDSACTTVIKRLSGSGQANPLAVATEEVE 407
                                    |...:|...||                       .|::.|:
 Worm   261 ------------------------KEFGKLQATQT-----------------------WASDVVD 278

  Fly   408 KMTPEQRRASAAKIQEEAKKREAAVDAEKSERSSSPAFDSDEESSVNQAQQLITQQKLNNMRKRS 472
            :.:.:..|.|  |:.::.||        .|.||..                          |..|
 Worm   279 RPSTQSFRNS--KMWKKVKK--------FSRRSMK--------------------------RDVS 307

  Fly   473 SIGLVFGAQAALLATRGKGNLQKSTTNSKSIEAMHQYHHHQQHHHNQSPLQRAQSKEEMRSLHHH 537
            |..::          :..|:::|.......:|            .:.:|...:::.:....|.  
 Worm   308 STSII----------KSSGSMRKKNNQDGYVE------------DSVTPCTSSRNSKRKSWLR-- 348

  Fly   538 QNQQQPHHQHHQNQPNPPLDRPKRTSCSTLSQIAEHD--RLVDLSAPPTLLNTSDPLSPVDLAPI 600
                                     :|:..|..:..|  ..|.::...|.|::|           
 Worm   349 -------------------------NCTGKSNSSSEDSSEAVAMNLDDTSLSSS----------- 377

  Fly   601 EVPSDQVHQGLV----QTILPPPDAFQCPTPLSDDYSDRPFGNSSGNSELALTYDLMTNSELRYM 661
                   |..|.    :.|.||     | ||:..::.|....::..:         |.|...|: 
 Worm   378 -------HFALSGSRRRNISPP-----C-TPMPTNFEDEEQTDAGAS---------MRNGSARF- 419

  Fly   662 DESSAMLASVTANSTTSPNDSVQGKPPVLPPPPPARRNPPKSNLNQSLSQTPSQNQSPSQSLSLN 726
                                                |:.|        |.|...|.|.:.::.:.
 Worm   420 ------------------------------------RSRP--------SDTGKNNNSDTYTVLIE 440

  Fly   727 LNPNHNQSQSQSIEEAVAIEKRLLVSYTGIEDFAKVRRESCIEAICLLDVPGKLAADCPHRRASS 791
            ||...::                          ..||..||                        
 Worm   441 LNDEGSR--------------------------PSVRLSSC------------------------ 455

  Fly   792 PMETSSKDAILYSPMPPMPLSPKVKTSTPQTGTPQSAAGVTPPVPLERIEERETSDSNTNKMPST 856
                        .|....|:|.:                           .|..||.|:      
 Worm   456 ------------EPYLDEPISTR---------------------------NRSKSDCNS------ 475

  Fly   857 SGTTSSTGGVGGGGEQDGVGATKKNAGDDDANREEKSLAASRNSSKRAFIHSIGKHFKSKKALPL 921
                                         :.:....||...::..|..   .|.|:|.|::    
 Worm   476 -----------------------------EIDERRHSLLNKQSPFKNG---RILKNFSSQE---- 504

  Fly   922 ILGVGGRQKSKSENRAR------KAFRTISFILGCFVACWTPYHVLALVEGFCRHPPCINEHLYM 980
                   :||:.|.|..      ||.:|:|.||..|:|.||||:::...|.|  .|..:...|:.
 Worm   505 -------RKSEKEQRKNERKQESKAAKTLSAILCAFIATWTPYNLIVCWEAF--FPNTVPNVLWT 560

  Fly   981 FSYFLCYANSPMNPFCYALANQQFKKTFTRILK 1013
            |||||||.||.:||.||||.|.:|:.|:.|||:
 Worm   561 FSYFLCYINSTINPLCYALCNARFRHTYMRILR 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-BNP_649764.1 7tm_1 150..>341 CDD:278431 64/191 (34%)
7tm_4 150..>336 CDD:304433 64/186 (34%)
gar-3NP_001024236.1 7tm_4 77..>202 CDD:304433 47/124 (38%)
7tm_1 82..>263 CDD:278431 65/219 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1245472at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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