DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-B and gar-3

DIOPT Version :10

Sequence 1:NP_649764.1 Gene:mAChR-B / 40955 FlyBaseID:FBgn0037546 Length:1019 Species:Drosophila melanogaster
Sequence 2:NP_001024236.1 Gene:gar-3 / 179962 WormBaseID:WBGene00001519 Length:611 Species:Caenorhabditis elegans


Alignment Length:943 Identity:186/943 - (19%)
Similarity:308/943 - (32%) Gaps:396/943 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LLLAVRNQSSDGG-----STMSGSS-------SDSEILGPVLPPFALWQTILIAICLAICIILTV 148
            :|:.|.|.|::..     :|.|.|:       |.|.:||..      .:.::|.:..|:..::|.
 Worm    22 MLVKVINTSAENATKTAIATSSTSTPSFVDTYSTSSLLGEE------GRMVMIVVIGAMFALVTS 80

  Fly   149 GGNILVLLAFIVDRNIRQPSNYFIASLAATDMLIGTVSMPFYTIYVLKGYWDLGPMLCDLWLSVD 213
            .||::|:::|.:|:.::..||||:.|||..|:.||.:|:|.:|.|.....||||..:|..||.:|
 Worm    81 LGNLMVMVSFKIDKQLQTISNYFLFSLAVADIAIGVISIPMFTYYTAIQKWDLGYTMCQFWLCID 145

  Fly   214 YTVCLVSQYTVLLITIDRYCSVKIAAKYRSWRTRTRVIYMVTITWIIPALLFFISIFGWEHFTGK 278
            |.:...|...:|||:.|||.||.....||..||..:.:.|:..|:||..:|:...|..|.:..||
 Worm   146 YLMSNASVLNLLLISFDRYFSVTRPLSYRPRRTTKKALTMIACTYIISLILWPPWIISWPYIEGK 210

  Fly   279 RDLLPGQCAVQFLK-DPIFNTALIIGYYWTTLIVLFVLYAGIYKTAYDMQKRSEAKQRKMQSMVA 342
            ....||.|.||||: :|.......:..::..:.::.:||..:|   ::.|||.            
 Worm   211 FTAEPGTCVVQFLQTNPYVTVGTAVAAFYLPVTIMCILYTRVY---WETQKRQ------------ 260

  Fly   343 LSAGAMSGMAGHAAGIGVIEEKILKTKVELAGDQTDLDSACTTVIKRLSGSGQANPLAVATEEVE 407
                                    |...:|...||                       .|::.|:
 Worm   261 ------------------------KEFGKLQATQT-----------------------WASDVVD 278

  Fly   408 KMTPEQRRASAAKIQEEAKKREAAVDAEKSERSSSPAFDSDEESSVNQAQQLITQQKLNNMRKRS 472
            :.:.:..|.|  |:.::.||        .|.||..                          |..|
 Worm   279 RPSTQSFRNS--KMWKKVKK--------FSRRSMK--------------------------RDVS 307

  Fly   473 SIGLVFGAQAALLATRGKGNLQKSTTNSKSIEAMHQYHHHQQHHHNQSPLQRAQSKEEMRSLHHH 537
            |..::          :..|:::|.......:|            .:.:|...:::.:....|.  
 Worm   308 STSII----------KSSGSMRKKNNQDGYVE------------DSVTPCTSSRNSKRKSWLR-- 348

  Fly   538 QNQQQPHHQHHQNQPNPPLDRPKRTSCSTLSQIAEHD--RLVDLSAPPTLLNTSDPLSPVDLAPI 600
                                     :|:..|..:..|  ..|.::...|.|::|           
 Worm   349 -------------------------NCTGKSNSSSEDSSEAVAMNLDDTSLSSS----------- 377

  Fly   601 EVPSDQVHQGLV----QTILPPPDAFQCPTPLSDDYSDRPFGNSSGNSELALTYDLMTNSELRYM 661
                   |..|.    :.|.||     | ||:..::.|....::..:         |.|...|: 
 Worm   378 -------HFALSGSRRRNISPP-----C-TPMPTNFEDEEQTDAGAS---------MRNGSARF- 419

  Fly   662 DESSAMLASVTANSTTSPNDSVQGKPPVLPPPPPARRNPPKSNLNQSLSQTPSQNQSPSQSLSLN 726
                                                |:.|        |.|...|.|.:.::.:.
 Worm   420 ------------------------------------RSRP--------SDTGKNNNSDTYTVLIE 440

  Fly   727 LNPNHNQSQSQSIEEAVAIEKRLLVSYTGIEDFAKVRRESCIEAICLLDVPGKLAADCPHRRASS 791
            ||...::                          ..||..||                        
 Worm   441 LNDEGSR--------------------------PSVRLSSC------------------------ 455

  Fly   792 PMETSSKDAILYSPMPPMPLSPKVKTSTPQTGTPQSAAGVTPPVPLERIEERETSDSNTNKMPST 856
                        .|....|:|.:                           .|..||.|:      
 Worm   456 ------------EPYLDEPISTR---------------------------NRSKSDCNS------ 475

  Fly   857 SGTTSSTGGVGGGGEQDGVGATKKNAGDDDANREEKSLAASRNSSKRAFIHSIGKHFKSKKALPL 921
                                         :.:....||...::..|..   .|.|:|.|::    
 Worm   476 -----------------------------EIDERRHSLLNKQSPFKNG---RILKNFSSQE---- 504

  Fly   922 ILGVGGRQKSKSENRAR------KAFRTISFILGCFVACWTPYHVLALVEGFCRHPPCINEHLYM 980
                   :||:.|.|..      ||.:|:|.||..|:|.||||:::...|.|  .|..:...|:.
 Worm   505 -------RKSEKEQRKNERKQESKAAKTLSAILCAFIATWTPYNLIVCWEAF--FPNTVPNVLWT 560

  Fly   981 FSYFLCYANSPMNPFCYALANQQFKKTFTRILK 1013
            |||||||.||.:||.||||.|.:|:.|:.|||:
 Worm   561 FSYFLCYINSTINPLCYALCNARFRHTYMRILR 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-BNP_649764.1 7tmA_mAChR_GAR-2-like 147..>323 CDD:320429 62/176 (35%)
TM helix 2 168..194 CDD:320429 13/25 (52%)
TM helix 3 206..236 CDD:320429 13/29 (45%)
TM helix 4 248..271 CDD:320429 6/22 (27%)
TM helix 5 293..322 CDD:320429 4/28 (14%)
7tm_GPCRs <932..1008 CDD:475119 35/81 (43%)
TM helix 6 941..963 CDD:410628 10/21 (48%)
TM helix 7 976..1001 CDD:410628 16/24 (67%)
gar-3NP_001024236.1 7tmA_mAChR_DM1-like 66..>261 CDD:320428 67/233 (29%)
TM helix 1 67..93 CDD:320428 7/25 (28%)
TM helix 2 100..126 CDD:320428 13/25 (52%)
TM helix 3 138..168 CDD:320428 13/29 (45%)
TM helix 4 180..203 CDD:320428 6/22 (27%)
TM helix 5 226..255 CDD:320428 4/31 (13%)
7tm_GPCRs <509..588 CDD:475119 35/80 (44%)
TM helix 6 523..545 CDD:410628 10/21 (48%)
TM helix 7 556..581 CDD:410628 16/24 (67%)

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