DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pbp95 and Snapc4

DIOPT Version :9

Sequence 1:NP_649760.1 Gene:Pbp95 / 40949 FlyBaseID:FBgn0037540 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_011237366.1 Gene:Snapc4 / 227644 MGIID:2443935 Length:1362 Species:Mus musculus


Alignment Length:469 Identity:107/469 - (22%)
Similarity:195/469 - (41%) Gaps:69/469 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LQLNQELQRRLMQVRTKILAMLQVVRARFSRNEDILVRRLRPRSHFGPNSLNLSGAILRK----- 93
            ||||...|.   .:|.|:..:.|::.....:.|:||              .:|||....|     
Mouse    95 LQLNMVYQE---VIREKLAEVSQLLAQNQEQQEEIL--------------FDLSGTKCPKVKDGR 142

  Fly    94 --GTFRFKGNL---FFRD-IDGRSCPNNEDYE------ARCHTEMFPTDFDMHSRHVWTLLDKKN 146
              .::.:.|:.   :|:| :.|...|.||:..      .:...::..|.:    :|....|.:|:
Mouse   143 SLPSYMYIGHFLKPYFKDKVTGVGPPANEETREKATQGIKAFEQLLVTKW----KHWEKALLRKS 203

  Fly   147 VIMGIKQQLLEHR------AHSTNALPSGSLKRKPIERH----------LSTLVSLLATADSSFS 195
            |:....|:||:.:      .|...:..|..|:|:.:|:.          ::.|.......:...|
Mouse   204 VVSDRLQRLLQPKLLKLEYLHEKQSRVSSELERQALEKQIKEAEKEIQDINQLPEEALLGNRLDS 268

  Fly   196 IDWNQISTLDLEYRHSPYSCEAMWRVYLTPDLRRDDWSPEEDETLLAVATANRMQNWELIAASL- 259
            .||.:||.::.|...|.......|:....|.:.:.:||.||.|.|.|:|..:....|.|:|..| 
Mouse   269 HDWEKISNINFEGARSAEEIRKFWQSSEHPSISKQEWSTEEVERLKAIAATHGHLEWHLVAEELG 333

  Fly   260 DRRSDYQCFVRFHTALRFLLEPKNSHRWSEEDNDKLRAIVDRNTANSVINWKKVVEYFPDKSKST 324
            ..||.:||..:|....:.|    ....|:||::..|..:|......:.|.::|:|.:...:....
Mouse   334 TSRSAFQCLQKFQQYNKTL----KRKEWTEEEDHMLTQLVQEMRVGNHIPYRKIVYFMEGRDSMQ 394

  Fly   325 LIGRYYYVLHPSISHEPFTTKEDMMLFAAVEEYNGKFHCFPRSLFPNRSLTQLRTRYHNVLAQRN 389
            ||.|:...|.||:....:..:||..|..||.:|..:.....|...|.||..|.|.||...|....
Mouse   395 LIYRWTKSLDPSLKRGFWAPEEDAKLLQAVAKYGAQDWFKIREEVPGRSDAQCRDRYIRRLHFSL 459

  Fly   390 KTDSWSVQDDTRLMSFVTQYGASQWLNCATFLGNHTRTSCRTRFLVIKKFLEQNPNAKVEDLPRR 454
            |...|:.:::.:|:..:.:||...|...|:.|.:.:.:.|.:::.::.:        |.:.|.|:
Mouse   460 KKGRWNAKEEQQLIQLIEKYGVGHWARIASELPHRSGSQCLSKWKILAR--------KKQHLQRK 516

  Fly   455 RSKKVSLVNSDNWA 468
            |.::..  :|..|:
Mouse   517 RGQRPR--HSSQWS 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pbp95NP_649760.1 DUF883 4..>74 CDD:295076 11/39 (28%)
SANT <194..240 CDD:304392 14/45 (31%)
SANT 229..276 CDD:197842 17/47 (36%)
Myb_DNA-binding 229..275 CDD:278669 17/46 (37%)
Myb_DNA-bind_6 287..350 CDD:290632 16/62 (26%)
SANT 392..438 CDD:197842 8/45 (18%)
Myb_DNA-binding 393..437 CDD:278669 8/43 (19%)
Snapc4XP_011237366.1 REB1 <200..>407 CDD:227476 51/210 (24%)
SANT 302..351 CDD:197842 17/48 (35%)
Myb_DNA-bind_6 357..420 CDD:372817 16/62 (26%)
Myb_DNA-bind_6 412..472 CDD:372817 17/59 (29%)
SANT 461..504 CDD:197842 8/42 (19%)
PHA03247 <815..1174 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6645
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006126
OrthoInspector 1 1.000 - - oto94286
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2047
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.990

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