DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3223 and RAD23A

DIOPT Version :10

Sequence 1:NP_649758.1 Gene:CG3223 / 40947 FlyBaseID:FBgn0037538 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_005044.1 Gene:RAD23A / 5886 HGNCID:9812 Length:363 Species:Homo sapiens


Alignment Length:336 Identity:66/336 - (19%)
Similarity:99/336 - (29%) Gaps:114/336 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 VKDYPLICEAAPFIVDTIRKELA--RNSSATQLQEQAASESTTS--------------------- 198
            ::||.:  :...|:|..:.|..|  ..|:..:....||.||:||                     
Human    61 IRDYRI--DEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKS 123

  Fly   199 -SEEE------NSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQI-----SRQQLANALANVT 251
             |||.      .|:.....|||.|.....||:......:....:.:|     .|:::..||    
Human   124 PSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAAL---- 184

  Fly   252 PFNSLSNIAQRNADEAVQ-------GDERPRTTSAPLAGVGGAAGTGAGSSSGAISSGSISSELL 309
                  ..:..|...||:       |...|...|...:.|.....|.|        :|....|.|
Human   185 ------RASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEA--------AGENPLEFL 235

  Fly   310 RNE----------------LARAFQSLSQDQP-------------------APVENMEVESGEGP 339
            |::                |....|.|.|:.|                   .|.|..::...||.
Human   236 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE 300

  Fly   340 VPEQAATAPADDVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSDGNVE 404
            |......||..:.         ..|.|:.      .|.:..:.|:||.......:|. ..:.|..
Human   301 VGAIGEEAPQMNY---------IQVTPQE------KEAIERLKALGFPESLVIQAYF-ACEKNEN 349

  Fly   405 HAINLLMLSMN 415
            .|.|.| ||.|
Human   350 LAANFL-LSQN 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3223NP_649758.1 Ubl_ubiquitin_like 9..75 CDD:340559
UBA_like_SF 373..410 CDD:473871 8/36 (22%)
RAD23ANP_005044.1 rad23 3..361 CDD:273167 66/336 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..160 18/78 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..227 6/31 (19%)
HIV-1 vpr binding 319..363 12/49 (24%)
Blue background indicates that the domain is not in the aligned region.

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