DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3223 and rad23ab

DIOPT Version :10

Sequence 1:NP_649758.1 Gene:CG3223 / 40947 FlyBaseID:FBgn0037538 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001032776.2 Gene:rad23ab / 562839 ZFINID:ZDB-GENE-051113-160 Length:404 Species:Danio rerio


Alignment Length:225 Identity:51/225 - (22%)
Similarity:78/225 - (34%) Gaps:63/225 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 PLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSEEENSLGAGSSSSGGSSSTAVAAAAA 225
            |:....||.:.:.|:.:          :|||.::|..|..:|.||      ...::|..|...|.
Zfish   151 PVSATPAPVVEEEIQGQ----------EEQAIAQSEASLTDELSL------LEAAASILVTGQAY 199

  Fly   226 ANRRDEMANIRQISRQQLANALANVTPFNSLSNIAQRNADEAV---------------QGDERPR 275
            .|...|:.:: ...|:|:..||.  ..||        |.|.||               |...||.
Zfish   200 ENLVTEIMSM-GYEREQVIAALR--ASFN--------NPDRAVEYLLTGIPAESEQPPQEVVRPT 253

  Fly   276 TTSAPLAGVGGAA---GTGAGSSSGAISSGSISSELLRNE----------------LARAFQSLS 321
            .:|.|.......|   ...||:.||...:.:...|.||::                |....|.|.
Zfish   254 PSSNPTPPAPQRAQPPPAAAGAESGGAQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLG 318

  Fly   322 QDQPAPVENM--EVESGEGPVPEQAATAPA 349
            :|.|..::.:  ..|.....:.|..|.|||
Zfish   319 RDNPQLLQQITQHQERFVQMLNEPEAEAPA 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3223NP_649758.1 Ubl_ubiquitin_like 9..75 CDD:340559
UBA_like_SF 373..410 CDD:473871
rad23abNP_001032776.2 rad23 2..402 CDD:273167 51/225 (23%)
Blue background indicates that the domain is not in the aligned region.

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