DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3223 and Rad23a

DIOPT Version :10

Sequence 1:NP_649758.1 Gene:CG3223 / 40947 FlyBaseID:FBgn0037538 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001365823.1 Gene:Rad23a / 19358 MGIID:105126 Length:367 Species:Mus musculus


Alignment Length:402 Identity:79/402 - (19%)
Similarity:125/402 - (31%) Gaps:115/402 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 AAEINTKHIQELFSLTSHLQISVTSRFNIL-QKILAE-----YPEFRRNL-GAQALIRDSVLFNM 146
            |..|..|.:|:   .|..:::.......:| :||.||     :|...:.| .|..::.|.|....
Mouse     2 AVTITLKTLQQ---QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKE 63

  Fly   147 LHEPEVVQNLV----------KDYPLICEAAPFIV----DTIRKELARNSS---ATQLQEQAASE 194
            .|..|  :|.|          :..|...||:|..|    ......||...|   .|..::::.||
Mouse    64 YHIDE--KNFVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSE 126

  Fly   195 STTSSEEENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQI-----SRQQLANALANVTPFN 254
            .:|::....|:.....|||.|.....||:......:....:.:|     .|:::..||       
Mouse   127 ESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAAL------- 184

  Fly   255 SLSNIAQRNADEAVQ-------GDERPRTTSAPLAGVGGAAGTGAGSSSGAISSGSISSELLRNE 312
               ..:..|...||:       |...|..        |....:.|.......::|....|.||::
Mouse   185 ---RASYNNPHRAVEYLLTGIPGSPEPEH--------GSVQESQAPEQPATEAAGENPLEFLRDQ 238

  Fly   313 ----------------LARAFQSLSQDQP-----------------------APVENMEVESGEG 338
                            |....|.|.|:.|                       .|.|..::...||
Mouse   239 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQVRPRQISRHQEQFIQMLNEPPGELADISDVEG 303

  Fly   339 PVPEQAATAPADDVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSDGNV 403
            .|......||..:.         ..|.|:.      .|.:..:.|:||.......:|. ..:.|.
Mouse   304 EVGAIGEEAPQMNY---------IQVTPQE------KEAIERLKALGFPESLVIQAYF-ACEKNE 352

  Fly   404 EHAINLLMLSMN 415
            ..|.|.| ||.|
Mouse   353 NLAANFL-LSQN 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3223NP_649758.1 Ubl_ubiquitin_like 9..75 CDD:340559
UBA_like_SF 373..410 CDD:473871 8/36 (22%)
Rad23aNP_001365823.1 rad23 3..365 CDD:273167 78/401 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 83..160 19/76 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..227 4/33 (12%)
Blue background indicates that the domain is not in the aligned region.

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