DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3223 and Rps27a

DIOPT Version :10

Sequence 1:NP_649758.1 Gene:CG3223 / 40947 FlyBaseID:FBgn0037538 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_112375.1 Gene:Rps27a / 100912032 RGDID:6489478 Length:156 Species:Rattus norvegicus


Alignment Length:118 Identity:17/118 - (14%)
Similarity:46/118 - (38%) Gaps:28/118 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 YLKAVVTKEMHLQFDASEL-------------------EIIHHGRVLEDADTL-NRTLQPNAVIH 73
            ::|.:..|.:.|:.:.|:.                   .:|..|:.|||..|| :..:|..:.:|
  Rat     4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

  Fly    74 CFQKI------KRYSPYVPPAAAEINTKHIQELFSLTSHLQISVTSRFNILQK 120
            ...::      ::...|..|...:...|.::  .::..:.::....:.:.|::
  Rat    69 LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVK--LAVLKYYKVDENGKISRLRR 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3223NP_649758.1 Ubl_ubiquitin_like 9..75 CDD:340559 13/65 (20%)
UBA_like_SF 373..410 CDD:473871
Rps27aNP_112375.1 Ubl_ubiquitin 1..76 CDD:340501 13/71 (18%)
Ribosomal_S27 103..147 CDD:460261 1/17 (6%)
Blue background indicates that the domain is not in the aligned region.

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