DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CD98hc and C50B6.7

DIOPT Version :9

Sequence 1:NP_001262354.2 Gene:CD98hc / 40941 FlyBaseID:FBgn0037533 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_506303.1 Gene:C50B6.7 / 179813 WormBaseID:WBGene00008220 Length:713 Species:Caenorhabditis elegans


Alignment Length:471 Identity:95/471 - (20%)
Similarity:158/471 - (33%) Gaps:144/471 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 EEKIKHLVALYQGSDTRVILDLTPNYAAKNSQLVQDAIANPEKRSAFVWVSGGKALPN------- 287
            |::.:.:|........|:|:|:..|:.....|...:.:.: ...|:|....|.::.|.       
 Worm    98 EQEFQDMVNRCNKVGVRIIVDIVMNHMVGIGQKSGNGVGS-SGSSSFDGTHGVQSFPGVPYSLGD 161

  Fly   288 -NWLKVGGN------RSAWEKVGDNYVLSQFEDGYYDLKMNSTIIRNEFGAVLKHLVALGVRGFR 345
             |..|..|:      :::.|.|.|..::     |..||...|..:|.:..|.|..||.:||.|||
 Worm   162 FNNPKCDGDIQGSDYQNSAEHVKDCRLV-----GLLDLNQASATVRAKIVAYLNKLVDMGVAGFR 221

  Fly   346 LKNTKFFALFDSLEDEQISSSPKDFS---LGPNEYGFYSH-------------------RQTTF- 387
            ...:|.....|.|   .|.:..||..   .|.|:..|..|                   |.|.| 
 Worm   222 HDASKHMWPQDIL---NILNDVKDLRSDIYGSNQRPFAVHEVIDRGGEAVKCGDYFGNGRYTNFN 283

  Fly   388 -----------------LSGLG-----------DVLYDYLSIVKNASDEAFFSVAEDVMEPQVYQ 424
                             |:.||           ||| :::....|..|.:.:.|.  ..:.|.|.
 Worm   284 FGAAVSAAAKQQSDWKYLANLGPGYGYGNNEDHDVL-NFIDNHDNQRDSSPYVVT--YKDGQKYN 345

  Fly   425 LSGDSGAYGIDLPMYGNFVKVLS--------KSKPDTSLQKELDNTLAQSGTDSWLQWNLADVYV 481
            |     |.|..|.....:.:|:|        :|.|::....:...|......|.....|..  :|
 Worm   346 L-----AVGFMLAWPYGYPRVMSSFAFSYSDQSPPNSGASNDYATTSPTFNGDQTCNSNSG--WV 403

  Fly   482 DTPQDPS--ALAMFLSLLPGVPVVAVDAVAYQNVTEETYRQITSLRKTASYMHGNLNLYQADPLV 544
            ...:.|:  .:|.|.|        ||...|..::..:|.|                        :
 Worm   404 CEHRWPAIRQMAKFRS--------AVQGTAAADIVTDTRR------------------------I 436

  Fly   545 AFSRIKSGNPGYFVIFNPTELPQASNFTIPDNLPDKMTVSYFSEQYNNNMDNSGKVAHAGRVNLK 609
            ||:|   ...|:|.:   .:...|.......|||    ...:.:.::..:|| ||.. ..::.::
 Worm   437 AFAR---DGKGFFAL---NQQDGAWTKIFATNLP----AGDYCDHFSGGLDN-GKCV-GTKITVR 489

  Fly   610 D-----LKVAPHSSII 620
            |     |.| |.:||:
 Worm   490 DDHTSYLSV-PSNSIV 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CD98hcNP_001262354.2 AmyAc_maltase-like 117..593 CDD:200468 85/437 (19%)
C50B6.7NP_506303.1 AmyAc_bac_euk_AmyA 31..421 CDD:200456 71/349 (20%)
AmyA 53..>354 CDD:223443 59/272 (22%)
Aamy_C 432..511 CDD:214749 21/110 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0366
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.