DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CD98hc and atgp-1

DIOPT Version :9

Sequence 1:NP_001262354.2 Gene:CD98hc / 40941 FlyBaseID:FBgn0037533 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_503064.2 Gene:atgp-1 / 178504 WormBaseID:WBGene00000224 Length:613 Species:Caenorhabditis elegans


Alignment Length:621 Identity:139/621 - (22%)
Similarity:226/621 - (36%) Gaps:182/621 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 KPAFTGMSKEELMKYANDPFWVRLRWIFFVCFWAIWVGMLVGAILIIIGAPKCAAPQPLPWYK-- 183
            :|...|::||:|.||.|||||..:|.|.||.||..||.|..|||.|::.:||||..|...|::  
 Worm    38 EPKPIGLTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCAEKQKPDWWQTK 102

  Fly   184 --------------RGPHAKFASVETCRPEDVQVAKKLVSAGAIYELPAAL--------TYDV-- 224
                          ......||.:.    :.:...:| :....:|..|...        :|||  
 Worm   103 VSYQLLTATFYDSDNDGVGDFAGIS----QKIDFLRK-IGVTTVYPTPVIKIHKDEYFNSYDVVD 162

  Fly   225 -----KKPEVEEKIKHLV------ALYQGSDTRV-ILDLT-PNYAAKN-SQLVQDAIANPE---- 271
                 ::...||:.|.|:      |:|...|..| .:||: |.:.::: |:.|   ||.|.    
 Worm   163 HNSVDERFGTEEQFKELIDTVHNRAMYLVMDLPVSTIDLSHPWFESRDESKFV---IAKPTDPGF 224

  Fly   272 KRSAFVWVSGGKALPNNWLKVGGNRSAWEKVGDNYVLSQFEDGYYDLKMNSTIIRNEFGAVLKHL 336
            ..|.|....|.    || :|..|..|:     .|.||:     :.:..:.|||    .||:.|.|
 Worm   225 NESNFYPFHGA----NN-IKYLGYPSS-----QNPVLN-----WKNADVKSTI----NGAIQKFL 270

  Fly   337 VALGVRGFRLKNTKFFALFDSL----ED------EQISSSPKDFSLGPNEYGFYSHRQTTFLSGL 391
             .|||.||.:.:....|: ||.    .|      |:::.|.:.:....:|   ...::....|.|
 Worm   271 -DLGVDGFHIDHISQLAV-DSKGRPNHDEAVKVLEELTKSVQIYVESRDE---LVDKKIVLFSSL 330

  Fly   392 GDV-----------LYDYLSIVKNASDEAFFSVAEDVMEPQVYQLSGD--SGAY-GIDLPMY--- 439
            .||           |..|:      .|.:|.::.|...:|.|.:...|  :.|| ..::..|   
 Worm   331 KDVEDLHVKATETGLLHYV------IDNSFANLDEKKCQPHVAKCVHDALNAAYQRHEVAKYTPH 389

  Fly   440 -------------------GNFVKVLSKSKPDTS-----LQKELDNTLAQSGTDSW---LQWNLA 477
                               .:.:..|..:.|..:     .:..|.:.::::|....   :||..|
 Worm   390 WQFSNSEASRLASRFESATAHLLSFLQLTLPGANSVYYGQEYGLKDAMSKNGEFKQMGVMQWYPA 454

  Fly   478 ----------DVYVDTPQDPSALAMFLSLLPGVPVVAVDAVAYQNVTEET----YRQITSLR-KT 527
                      |..:..|:....|.:             |....|..||.:    ||::..|| :.
 Worm   455 GKDHHGFSGNDAPIFFPESDDKLEL-------------DNYNTQFETENSALKIYRKLAKLRQRD 506

  Fly   528 ASYMHGNL---NLYQADPLVAFSRIKSGNPGYFVIFNPTELPQASNFTIPDNLPDK-----MTVS 584
            .:.:.|..   .|...| ::.|||       |....|.|  ...|.|.:..|..||     .::.
 Worm   507 EALIVGETVRDELINED-VILFSR-------YVQAVNNT--ATGSTFIVALNFGDKEQKIDFSIE 561

  Fly   585 YFSEQYNNNMDNSGKVAHAGRVNLKDLKVAPHSSII 620
            ..|:...:|.|...........|:.|.:|..|.:.:
 Worm   562 PASKLIPSNKDLLNAEISVVTANVTDYRVRDHHNFV 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CD98hcNP_001262354.2 AmyAc_maltase-like 117..593 CDD:200468 133/592 (22%)
atgp-1NP_503064.2 SLC3A2_N 43..100 CDD:374310 30/56 (54%)
AmyAc_family 97..512 CDD:393300 88/465 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I6149
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.712175 Normalized mean entropy S6632
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1384693at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.870

Return to query results.
Submit another query.