DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsx and Dmrtc1c1

DIOPT Version :9

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_001014244.2 Gene:Dmrtc1c1 / 363483 RGDID:1359563 Length:280 Species:Rattus norvegicus


Alignment Length:91 Identity:30/91 - (32%)
Similarity:39/91 - (42%) Gaps:20/91 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   462 SPSSPSGPSAVHNQKPSRPGSSNGTVHSAASPTMVTTMATTSSTPT---LSRRQRS-RSATPTTP 522
            :||:|.||||          ||.|:|....:.......||.|..|.   |:|.|.| |:..|...
  Rat     8 APSTPPGPSA----------SSTGSVQPPWALPQPLQRATISRLPAGLGLAREQMSLRTMEPKDK 62

  Fly   523 PPPPPAHSSSNGAYHHGHHLVSSTAA 548
            |..|...|:|.  |:.|:.    |||
  Rat    63 PAVPCRPSTSE--YNMGNR----TAA 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:279137
DSX_dimer 353..404 CDD:285978
Dmrtc1c1NP_001014244.2 DMRT-like 209..>273 CDD:374115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12322
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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