DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsx and Dmrtb1

DIOPT Version :9

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_001178690.1 Gene:Dmrtb1 / 313484 RGDID:1560921 Length:348 Species:Rattus norvegicus


Alignment Length:518 Identity:103/518 - (19%)
Similarity:136/518 - (26%) Gaps:246/518 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRA---LHM 103
            |.|:||||||..:.:|||...|::::|.|:||.|..:||::||.|..|:. ||.:||.|   ...
  Rat     5 PKCSRCRNHGYLVPVKGHAGKCRWKHCICDKCYLITERQKIMAAQKVLKN-QATEEQGATVGTQG 68

  Fly   104 HEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSA-- 166
            .::||..||                                          .|||.|.|:.|:  
  Rat    69 PQLPPRAPA------------------------------------------PAAATATASSSSIC 91

  Fly   167 --PASHLGGSSTAASSIHGHAHAHHVHMAAAAAASVAQHQHQSHPHSHHHHHQNHHQHPHQQPAT 229
              |.:.|||:.                 ...||....:...|:                      
  Rat    92 PLPRAALGGAG-----------------PGPAATCFLERSPQA---------------------- 117

  Fly   230 QTALRSPPHSDH----GGSVGPATSSSGGGAPSSSNAAAATSSNGSSGGGGGGGGGSSGGGAGGG 290
                |||..|..    .|..||:|...|                  |||.||             
  Rat   118 ----RSPGPSAFQLVPSGRPGPSTFQPG------------------SGGSGG------------- 147

  Fly   291 RSSGTSVITSADHHMTTVPTPAQSLEGSCDSSSPSPSSTSGAAILPISVSVNRKNGANVPLGQDV 355
                     ..|.....:|        .....:|.|........||:.           |:.:..
  Rat   148 ---------LHDRPPAWLP--------QLRPQAPRPELCCPDQHLPVR-----------PVPRLP 184

  Fly   356 FLDYCQKLLEKFR--------YPWELMPLMYVILKDADANIEEASRRIEEARVEINRTVAQIYYN 412
            |.||...|  :|:        ||                           .|....:..|.|...
  Rat   185 FADYGHPL--RFKSDHVVGAGYP---------------------------EREPFKQCPACIPVP 220

  Fly   413 YYTPMALVN--------GAPMYLTYPSIEQGRY-GAHFTHLPLTQI----CPPTPEPLALSRSPS 464
            .|.|..|..        |.|....:..:..|.| |......|...:    |.|.|.||     |.
  Rat   221 PYQPFPLSEGQDSSSALGVPQQRGFRHVSCGPYHGNSLVSEPARDLQPTYCSPPPPPL-----PP 280

  Fly   465 SPSGPSAVHNQKPSRPGSSNGTVHSAASPTMVTTMATTSSTPTLSRRQRSRSATPTTPPPPPP 527
            .|..|...|...|.                                   ..||....||||||
  Rat   281 PPPQPQQPHFLPPG-----------------------------------YLSALHFLPPPPPP 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:279137 21/43 (49%)
DSX_dimer 353..404 CDD:285978 8/58 (14%)
Dmrtb1NP_001178690.1 DM 3..49 CDD:279137 21/43 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3815
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

Return to query results.
Submit another query.