DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsx and Dmrta2

DIOPT Version :9

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_001101421.2 Gene:Dmrta2 / 313471 RGDID:1308173 Length:536 Species:Rattus norvegicus


Alignment Length:567 Identity:154/567 - (27%)
Similarity:189/567 - (33%) Gaps:173/567 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PRTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRALH 102
            ||| |.||||||||:...||||||||:::.|.|.||.|.|:||||||.|.||||.|||:|..|..
  Rat    64 PRT-PKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARE 127

  Fly   103 MHEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167
            :.           ||                         :.:..|..|     |||....|..|
  Rat   128 LQ-----------LL-------------------------YGTAEGLAL-----AAANGIIPPRP 151

  Fly   168 ASHLGGSSTAASSIHGHAHAHHVHMAAAAAASVAQHQHQ------------SHPHSHHHHHQNHH 220
            |..:.||..|.......|.|.......|..|..|:.:.|            ..|.|         
  Rat   152 AYEVFGSVCATDGGGPGAGAPAGSAGGAGGAGGAEAKLQKFDLFPKTLLQAGRPDS--------- 207

  Fly   221 QHPHQQPATQTALRSPPHSDHGGSVGPATSS---------------SGGGAP-SSSNAAAATSSN 269
              |...|       ..|.|..|...||.|||               |..|:| :.::..|..|..
  Rat   208 --PQPPP-------GKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCP 263

  Fly   270 GSSGGGGGGGGGSSGGGAGGGRSSGTSVITSAD-HHMTTVPTPAQSLEGSCDSSSPSPSSTSGAA 333
            ||:|..|||...|.|..:..|..||    :.|| ......|||  .|.|     .|.|...:...
  Rat   264 GSAGASGGGEEDSPGSSSPLGSESG----SEADKEEAEAAPTP--GLGG-----GPGPRQRTPLD 317

  Fly   334 ILPISVSVNRKNGANVPL---GQDVFLDYCQKLLEKFR----------YPWELMPLMYVILKDAD 385
            ||......:|:....:.|   |.|| :...:::|...|          .|.|...:      .|.
  Rat   318 ILTRVFPGHRRGVLELVLQGCGGDV-VQAIEQVLNHHRGGLAAGLGPAAPLEKAAV------SAA 375

  Fly   386 ANIEEASRRIEEARVEINRTVAQIYYNYYTPMALVNGAPMYLTYPSIEQGRYGAHFTHLPLTQIC 450
            |.:|:|    ...|||               .|...||.:    |:..|....|...|.||. ..
  Rat   376 AAVEDA----WPGRVE---------------AAAAGGAGL----PAPLQTGPAAPPHHRPLL-AG 416

  Fly   451 PPTPEPLA--LSRSPSSPSGPSAVH--------------NQKPSRPGSSNGTVHSAASPTMVTTM 499
            ..||..|.  .|||..||..|:|.|              ...|.|...|....||.....| ...
  Rat   417 AMTPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFM-APY 480

  Fly   500 ATTSSTPTLSRR----------QRSRSATPTTPPPPPPAHSSSNGAY 536
            :|....|||..|          .|.|||.........|.:  ..|.|
  Rat   481 STAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPGY--GGGLY 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:279137 29/44 (66%)
DSX_dimer 353..404 CDD:285978 13/60 (22%)
Dmrta2NP_001101421.2 DM 65..111 CDD:395608 31/46 (67%)
CUE_DMA_DMRTA2 311..352 CDD:270601 8/41 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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