DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsx and dmd-3

DIOPT Version :10

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_001256882.1 Gene:dmd-3 / 189878 WormBaseID:WBGene00012832 Length:250 Species:Caenorhabditis elegans


Alignment Length:119 Identity:41/119 - (34%)
Similarity:58/119 - (48%) Gaps:17/119 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 TMSDSDMID--SKNDVCGGASSSSGSSISPRTP----PNCARCRNHGLKITLKGHKRYCKFRYCT 69
            |.|:.|.::  |:::.   .:.|||.......|    |||.||..|.:...||||||.|.||.|.
 Worm    81 TCSEEDQMECTSQSET---TNESSGEDKDDGKPKERRPNCQRCAQHSVVNRLKGHKRACPFRDCF 142

  Fly    70 CEKCRLTADRQRVMALQTALRRAQAQDEQRALHMHEVP--------PANPAATT 115
            |.||::..:||::||.|..|||.|.:::.......|.|        |.:...||
 Worm   143 CAKCQVVVERQKLMADQIKLRRRQKREKNNLNSEREAPIAHSMTPSPIDTVTTT 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:459924 24/48 (50%)
DSX_dimer 351..398 CDD:462612
dmd-3NP_001256882.1 DM 15..60 CDD:459924
DM 113..166 CDD:214606 27/52 (52%)
Blue background indicates that the domain is not in the aligned region.

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