DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsx and dmrtb1

DIOPT Version :10

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:XP_002931473.2 Gene:dmrtb1 / 100497719 XenbaseID:XB-GENE-6458749 Length:249 Species:Xenopus tropicalis


Alignment Length:232 Identity:50/232 - (21%)
Similarity:79/232 - (34%) Gaps:85/232 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ASSSSGSSISPRT--PPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALR 90
            ||:...|.:.|:.  .|.|:|||||||.:.::||...|..::|||.||.|.::|.:::|....||
 Frog     4 ASAEPASLVPPKVARTPKCSRCRNHGLLVPVRGHSGRCARKFCTCPKCSLISERAKILAAHKQLR 68

  Fly    91 RAQAQDEQRALHMHEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQ 155
            ::..|.|.                         |||             .||.            
 Frog    69 KSAPQAES-------------------------AAP-------------EGGE------------ 83

  Fly   156 AAAAAAAAPSAPASHLGGSSTAASSIHGHAHAHHVHMAAAAAASVA--QHQHQSHPHSHHHHHQN 218
                            ||:|.||:....|   ..:..|....:.:.  .|..:..|:..:...:.
 Frog    84 ----------------GGNSKAATGAGSH---KEIGQAVVKYSDIGPPPHHLECMPNMEYFERET 129

  Fly   219 HHQHPHQQPATQTALRSPPHS--------DHGGSVGP 247
            ...:|...|    ....||.|        .:||::.|
 Frog   130 SRIYPAYPP----MCTYPPFSMGLKVAPPGYGGAIPP 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:459924 20/44 (45%)
DSX_dimer 351..398 CDD:462612
dmrtb1XP_002931473.2 DM 18..63 CDD:459924 19/44 (43%)
Blue background indicates that the domain is not in the aligned region.

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