DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsx and LOC100359752

DIOPT Version :9

Sequence 1:NP_001262353.1 Gene:dsx / 40940 FlyBaseID:FBgn0000504 Length:572 Species:Drosophila melanogaster
Sequence 2:XP_038953287.1 Gene:LOC100359752 / 100359752 RGDID:2323488 Length:735 Species:Rattus norvegicus


Alignment Length:174 Identity:34/174 - (19%)
Similarity:59/174 - (33%) Gaps:37/174 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   395 IEEARVEINRTVAQIYYNYYTPMALVNGAPMYLTYPSIEQGRYGAHFTHLPLTQICPPTPEPLAL 459
            :.|||....|.|.|...|  :...:.|...:   :|..:.     :.|...:|||...:.|.|.|
  Rat   578 LREARPSCTRAVTQTSRN--SVAGVKNNVDI---HPGGKD-----NLTSRFITQILGKSHESLKL 632

  Fly   460 SRSP----------SSPSGPSAVHNQKPSRPGSSNGTVHSAASPTMVTTMATTSSTPTLSRRQRS 514
            ...|          .|......:.||......:.:..:.|.|:.:...|:...||..:..|    
  Rat   633 KSQPHIFESDLETEDSQLQQQQLANQVQEADAAEHSPIESRAARSRRQTVCLESSRASTKR---- 693

  Fly   515 RSATPTTPPPPPPAHSSSNGAYHHGHHLVSSTAATXQYRNVAAA 558
                         ..|:::...:.....||:||.. .:.|:||:
  Rat   694 -------------CSSAAHQRQYSSKTQVSNTAKPKNFLNIAAS 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsxNP_001262353.1 DM 41..86 CDD:279137
DSX_dimer 353..404 CDD:285978 3/8 (38%)
LOC100359752XP_038953287.1 DUF4708 50..323 CDD:406292
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3815
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.