DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10445 and Ercc6

DIOPT Version :10

Sequence 1:NP_649751.2 Gene:CG10445 / 40938 FlyBaseID:FBgn0037531 Length:945 Species:Drosophila melanogaster
Sequence 2:NP_001423629.1 Gene:Ercc6 / 306274 RGDID:1311509 Length:1474 Species:Rattus norvegicus


Alignment Length:993 Identity:199/993 - (20%)
Similarity:324/993 - (32%) Gaps:404/993 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DSSGEINNWMEPEPVDSLELSGEYADNESAIFVSASE---YNEKKAQIDQLVQKILTMEQQQRQL 90
            |:.||.:.   ..|.|..|   |....|..:.|.:|:   |..|..:..|..:|.:.:::.....
  Rat   366 DTEGEESG---SSPTDGEE---EEEQEEEGVAVLSSDDISYELKPLRKGQKYEKKVPVQEIDDDF 424

  Fly    91 EENASETKELCDLKLHLEKLNARLEALGEFLDTLRLR-------EDQQEIKIEDNSELVDHTEQP 148
            ..::.|..|..:.:....|::.|.:...|.....|||       :|::::|:||:||..|     
  Rat   425 FPSSEEEDEAVEGRGGGRKVSRRPDDGDEDYYKQRLRRWNRLRLQDKEKLKLEDDSEESD----- 484

  Fly   149 KWSNLYSGLNRYRQKANHTAAQFYQHKSNIIDSLKTLYEPIQPRPAIDDLEKQPALLLVRLLKHQ 213
                                |:|                        |:..|.|..|..:|.|:|
  Rat   485 --------------------AEF------------------------DEGFKVPGFLFKKLFKYQ 505

  Fly   214 QSCLKWMQFRERQKISGGILADDMGLGKTLSMIALILASEETKNRKREEKKKALTLKWTQEFNRV 278
            |:.::|:.....|: :||||.|:||||||:.:||.:.....:|.|.|.                 
  Rat   506 QTGVRWLWELHCQQ-AGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRG----------------- 552

  Fly   279 YCKEIRKISMFDDEEESGKEEEQYEPPEKRTCHVKTKKINQFRILDDDDNDAGDKAVVEDEQKDL 343
                                                                             
  Rat   553 ----------------------------------------------------------------- 552

  Fly   344 LAKTPEPEVFSSDEEEEHLSNGRYPSAN-TLVVCPMSVMCQWAHEVASKVAQNAIRVLTFH---G 404
                               ||.|:.... ||:|||.:||.||..|              ||   .
  Rat   553 -------------------SNYRFEGLGPTLIVCPTTVMHQWVKE--------------FHTWWP 584

  Fly   405 PNR----HEIGIEAFRSYDLV----------ITSYN---LVVNELKRYGNTSPLFAVYWNRVILD 452
            |.|    ||.|..|.|...||          ||||:   |:.:::.|:.         |:.||||
  Rat   585 PFRVAILHETGSCAHRKERLVRDIVHCHGVLITSYSYIRLMQDDISRHD---------WHYVILD 640

  Fly   453 EAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFV------NVPNFQDLQQWKK 511
            |.|.|||.......:..|.|......|:|:|:||...::::|..|.      .:|.|  ::|:..
  Rat   641 EGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFPGKLGTLPVF--MEQFSV 703

  Fly   512 NLNESMLGHRR---------------LNFIIKPLMLRRTKQKLQASGDMPALPSLKIELICVQLS 561
            .:  :|.|:..               |...|.|.:|||.|..::.|..:|              .
  Rat   704 PI--TMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLP--------------D 752

  Fly   562 KTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQFIAGHMSDERYNEIYERFLKSLG 626
            |.|..::..|:....|::..|:      :|...|..|....|..:|                   
  Rat   753 KNEQVLFCRLTDEQHKVYQNFI------DSKAVYRILNGENQIFSG------------------- 792

  Fly   627 YNPGEKILGIYILVLLLRLRQFCCHPGLMIGMLRGALTAEDVQNVKVDASDVEGQLKMDVLAELD 691
                           |:.||:.|.||.|..|                      |......|.|  
  Rat   793 ---------------LVALRKICNHPDLFSG----------------------GPKNTSALPE-- 818

  Fly   692 KFDETDSEDDCCDEEDSTRRDGNFKLEVIKDEIKEENVPWDSGDDLPTASSFEDQLDSARALKLL 756
                                          |.::||.                            
  Rat   819 ------------------------------DGLEEEQ---------------------------- 825

  Fly   757 NPQNPIFQFIRPSAKLKMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQL 821
                  |.:.:.|.|: :|::.|.::......::::.||....|.|:...|:...:..|..:|..
  Rat   826 ------FGYWKRSGKM-IVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTT 883

  Fly   822 TAKEREIVLRDFNANNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQT 886
            |...|:.::..:|.:....|.||:...||:|:||..||.::|.|..|||..:.||::|.:|.||.
  Rat   884 TIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQK 948

  Fly   887 KPTFIYRYMCQDTVEQRI------------KSLQDCK----------LEIAKVVLPE--EGGEVT 927
            |...:||.:...|:|::|            :.|:|.|          .|:..:..|:  :|.|.:
  Rat   949 KQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQGTETS 1013

  Fly   928 KCVGG-GLNLAELKKLFE 944
            ....| |.|:..||..|:
  Rat  1014 AIFAGTGSNIQTLKCHFK 1031

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10445NP_649751.2 HepA <113..919 CDD:440319 173/876 (20%)
DEAD-like_helicase_N 209..534 CDD:475120 80/366 (22%)
Ercc6NP_001423629.1 cc_ERCC-6_N 83..159 CDD:411064
HepA 316..981 CDD:440319 186/941 (20%)
CSB_WHD 1402..1473 CDD:439329
Blue background indicates that the domain is not in the aligned region.

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