DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2678 and Zkscan2

DIOPT Version :9

Sequence 1:NP_649750.1 Gene:CG2678 / 40937 FlyBaseID:FBgn0014931 Length:434 Species:Drosophila melanogaster
Sequence 2:XP_001079250.1 Gene:Zkscan2 / 368120 RGDID:1359568 Length:960 Species:Rattus norvegicus


Alignment Length:401 Identity:79/401 - (19%)
Similarity:128/401 - (31%) Gaps:131/401 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 WQSEQSYQHFFRVLNQSGAPENQVHLAACNGDKNQIINQKMQLKSD----------------RQQ 124
            |:.|:|.|.  .||..||:...          ..:.|.::.:.:..                ::.
  Rat   612 WEPEESSQE--AVLEDSGSERM----------SEEEITEEPEFEGSAGLPQSPTDFEIGNIIKEA 664

  Fly   125 DTQQMTK--------TQKPDDDLSQK-----------------QTLQAKLQEGNIDGPPE---SF 161
            .||.:.|        .:||...:||.                 :.||. :::|.:...|.   ..
  Rat   665 PTQVIFKDTESHRALIEKPKRFVSQNTNPSKYGKRECFSGRHWENLQG-VRQGKLMSQPRDTGKA 728

  Fly   162 TLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCPHCSKRFCSQTQLRTHITDLCNRCPYC 226
            .:|.|....|...:.....:...||.:::|                    ..||..:...:|..|
  Rat   729 VVHQRPFVGRRPYRLLKYGENFGRSARLVC--------------------RMTHQKENPYKCGVC 773

  Fly   227 PRTYMQKSNLKRHLRNHLSKPAHKCFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQ 291
            .:.:.:..:|.||.|.|..:...||..|.|:|....:...|||.|..:.|..|.:|...|.:...
  Rat   774 GKCFGRSRSLIRHQRIHTGEKPFKCLDCGKSFNDSSNFGAHLRIHTGEKPYRCRECGKCFSQSSS 838

  Fly   292 LEIHRREHKQRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPI-CDICQK 355
            |.||:|.|...                                            ||. |:.|.|
  Rat   839 LIIHQRTHTGE--------------------------------------------KPYQCEECGK 859

  Fly   356 KFSSVYALKRHMLTHNRQH---HLKKCTYCSEEFKTEKHLKRHERGHMGDL-FRCEFCSLVFVDV 416
            .|::    ..|...|.|.|   :..||..|.:.|......:.|.|.|.|:. :.|..|...|...
  Rat   860 SFTN----SSHFSAHRRAHTGENPYKCGDCEKSFNNCTRFREHRRIHTGEKPYTCAQCGKHFNKS 920

  Fly   417 NYLRKHKKRIH 427
            ::|.||:: ||
  Rat   921 SFLTKHRE-IH 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2678NP_649750.1 zf-AD 8..85 CDD:214871 4/8 (50%)
COG5048 220..>284 CDD:227381 19/63 (30%)
C2H2 Zn finger 223..243 CDD:275368 6/19 (32%)
zf-C2H2 249..271 CDD:278523 8/21 (38%)
C2H2 Zn finger 251..271 CDD:275368 7/19 (37%)
C2H2 Zn finger 279..299 CDD:275368 7/19 (37%)
C2H2 Zn finger 350..370 CDD:275368 5/19 (26%)
C2H2 Zn finger 379..399 CDD:275368 5/19 (26%)
C2H2 Zn finger 406..427 CDD:275368 6/20 (30%)
Zkscan2XP_001079250.1 SCAN 42..148 CDD:128708
SCAN 42..129 CDD:280241
KRAB <241..282 CDD:214630
Myb_DNA-bind_4 334..415 CDD:290549
ABC_trans_N <466..505 CDD:291196
Myb_DNA-bind_4 490..571 CDD:290549
COG5048 <766..915 CDD:227381 45/196 (23%)
zf-C2H2 768..790 CDD:278523 6/21 (29%)
C2H2 Zn finger 770..790 CDD:275368 6/19 (32%)
zf-H2C2_2 782..806 CDD:290200 9/23 (39%)
C2H2 Zn finger 798..818 CDD:275368 7/19 (37%)
zf-H2C2_2 814..835 CDD:290200 8/20 (40%)
C2H2 Zn finger 826..846 CDD:275368 7/19 (37%)
zf-H2C2_2 838..863 CDD:290200 11/68 (16%)
C2H2 Zn finger 854..874 CDD:275368 7/23 (30%)
zf-H2C2_2 866..891 CDD:290200 8/24 (33%)
C2H2 Zn finger 882..902 CDD:275368 5/19 (26%)
zf-H2C2_2 895..918 CDD:290200 6/22 (27%)
C2H2 Zn finger 910..930 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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