DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2678 and Zscan20

DIOPT Version :9

Sequence 1:NP_649750.1 Gene:CG2678 / 40937 FlyBaseID:FBgn0014931 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_808426.2 Gene:Zscan20 / 269585 MGIID:2679268 Length:1030 Species:Mus musculus


Alignment Length:310 Identity:76/310 - (24%)
Similarity:108/310 - (34%) Gaps:87/310 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 TQQMTKT-QKPD------DDLSQKQTLQAKLQEGNIDGPPE-------------SFTLHPRKRTC 170
            |.|.|.| :||.      ...:|...| .|.|..::.|||.             |::.|.|:.: 
Mouse   770 THQRTHTGEKPYKCGLCWKSFNQSSNL-LKHQRVHLGGPPNQRDEPGENFGQSLSYSAHWRRNS- 832

  Fly   171 RTEEQADMIPKEATRSTKMICDADG---------YYNCPHCSKRFCSQTQL----RTHITDLCNR 222
             |:|.    ||| .::..|..|:.|         .|:||.|.:.|...:.|    |.|..:....
Mouse   833 -TQEG----PKE-PQNISMGADSPGACHPNSGEKLYSCPECGRCFSKSSALTSHQRIHSGEKPYE 891

  Fly   223 CPYCPRTYMQKSNLKRHLRNHLSKPAHKCFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFI 287
            |..|.:::.:.|:|..|.|.|..:..|||..|.|.|..:..|..|.|.|..:.|..|.:|...|.
Mouse   892 CAVCGKSFSKSSSLANHRRTHTGEKPHKCADCGKCFSERSKLITHQRVHTGEKPYECPECGKFFR 956

  Fly   288 EHVQLEIHRREHKQRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPI-CD 351
            :...|..|:|.|...                                            ||. |.
Mouse   957 DRSNLITHQRIHTGE--------------------------------------------KPYKCR 977

  Fly   352 ICQKKFSSVYALKRHMLTHNRQHHLKKCTYCSEEFKTEKHLKRHERGHMG 401
            .|.|.|:...:|..|...|..:... |||.|.::|....|...|.|.|.|
Mouse   978 ECGKCFNQSSSLIIHQRIHTGEKPY-KCTECGKDFNNSSHFSAHRRTHAG 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2678NP_649750.1 zf-AD 8..85 CDD:214871
COG5048 220..>284 CDD:227381 20/63 (32%)
C2H2 Zn finger 223..243 CDD:275368 6/19 (32%)
zf-C2H2 249..271 CDD:278523 9/21 (43%)
C2H2 Zn finger 251..271 CDD:275368 7/19 (37%)
C2H2 Zn finger 279..299 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..370 CDD:275368 6/19 (32%)
C2H2 Zn finger 379..399 CDD:275368 7/19 (37%)
C2H2 Zn finger 406..427 CDD:275368
Zscan20NP_808426.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..42
SCAN 41..126 CDD:366881
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..201
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..285
Myb_DNA-bind_4 315..400 CDD:372747
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..441
Myb_DNA-bind_4 476..561 CDD:372747
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 578..600
COG5048 686..1020 CDD:227381 72/302 (24%)
C2H2 Zn finger 727..747 CDD:275368
C2H2 Zn finger 755..775 CDD:275368 2/4 (50%)
C2H2 Zn finger 783..803 CDD:275368 4/20 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 801..820 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 828..850 8/28 (29%)
C2H2 Zn finger 864..884 CDD:275368 6/19 (32%)
C2H2 Zn finger 892..912 CDD:275368 6/19 (32%)
C2H2 Zn finger 920..940 CDD:275368 7/19 (37%)
C2H2 Zn finger 948..968 CDD:275368 6/19 (32%)
C2H2 Zn finger 976..996 CDD:275368 6/19 (32%)
C2H2 Zn finger 1004..1024 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.