DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS-m and rars2

DIOPT Version :9

Sequence 1:NP_001262351.1 Gene:ArgRS-m / 40929 FlyBaseID:FBgn0037526 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_956911.1 Gene:rars2 / 393589 ZFINID:ZDB-GENE-040426-1244 Length:597 Species:Danio rerio


Alignment Length:588 Identity:204/588 - (34%)
Similarity:309/588 - (52%) Gaps:63/588 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PVKKQQLQNSRRPTVEWILPSAFAQQEVELLDS----LKKRRFEAYVENVRIVPSAGRSAAKIEF 108
            ||.|:|.....|.:|..:|.|...:.:.:|.::    .::.|.:|.||  .|:|..|    .|.|
Zfish    32 PVNKKQSVADLRVSVSHLLQSGAVRPDGDLQNTTHTLARQIRTDAVVE--EIIPGRG----VIHF 90

  Fly   109 QLQPQVFVEQLLQTKEIALHPSPFAAE----------HIVVEYSSPNIAKPFHVGHLRSTIIGNV 163
            :|...:..::||.  ::...|..|..:          ..:||:|||||||.||.||||||||||.
Zfish    91 RLNKLLLAQKLLD--QLRSDPDGFGVKSEILRQLRVGRTLVEFSSPNIAKKFHAGHLRSTIIGNF 153

  Fly   164 LANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLLNVSDKEMQLSPIETLYKS------------ 216
            :|||.:.||....|:|||||||.|||||..|.:... |.::::..|:|.|::|            
Zfish   154 IANLKKALGNEVIRVNYLGDWGMQFGLLGSGFERFG-SQEKLRTQPLEHLFESSVGGCCVYLYGS 217

  Fly   217 --------YVAANKAAEQRPEIAQQARDLFAALEGGTDKSMAKKWQQYRNYTIEDLSKVYNRLGV 273
                    ||..|:.||....:...|...|..||...:::: :.|:.:|..||.:..::|.||||
Zfish   218 AVCVRPQVYVQVNREAESDASVRSAAAHFFRRLEQSEEQAL-ELWRHFREITIHEYKRIYQRLGV 281

  Fly   274 HFDSYEWESQYSQQQIQDVLDKLRSAGLLQPEHDGREIVVVDGR-----RIPVIKSNGSTLYLAR 333
            .||.|..|| :.:.:.|.|||:|||..||:....|..:|.:..:     ...:::|:|::||:.|
Zfish   282 EFDHYSGES-FHRAETQTVLDELRSRCLLKTSQKGTGVVDLSDKGDMSNYATLVRSDGTSLYITR 345

  Fly   334 DIAALLERLSRFQFSRLLYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGMSTRQGK 398
            |:||.|:|..||.|..::||.|..|..||..||:...|:..:.: ....||.||.:.|||||:|:
Zfish   346 DVAAALDRKQRFSFDEMIYVTDKSQTMHFQQLFRILQAMGHQWA-GSCHHVAFGLVQGMSTRRGE 409

  Fly   399 AIFLKDVLDEARDIMREKRNISATTRENYNLDD-EHVCDILGVSAVLVNVLKQRRQRDHEFSWQQ 462
            .:||:|||:||:..|......|.|::|   |:| |...:.:|:||::|...|.....|:.|.|.:
Zfish   410 VLFLEDVLEEAQSRMIHNMRQSRTSKE---LEDPELTAERIGISALIVQDFKGPLISDYRFEWDK 471

  Fly   463 ALQVNGDTGIKLQYTHCRLHSLL-DNFRDVDLDDIKPDWKHFSTEPADALDLLYALARFDQSVWQ 526
            .||..||||:.|||||.||.||| ....::...|..|      ...:.::.||..|.|:|:.:.|
Zfish   472 VLQAQGDTGVFLQYTHARLCSLLRQQDCEISCSDFSP------LTDSRSVSLLQHLLRYDEVLLQ 530

  Fly   527 SKEQLEACVLVNYLFGLCNATSQALKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPL 591
            ....|:...|||:|..|.:..:.|.:.||||..|....| .||.||.:....|.:||.:||:.|:
Zfish   531 CATDLQPKHLVNFLMTLSHLVASAHRELPVKGSSEAVAQ-ARLCLFSSVHSVLANGMRILGITPV 594

  Fly   592 NQM 594
            ::|
Zfish   595 DKM 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRS-mNP_001262351.1 ArgS 67..594 CDD:223097 196/567 (35%)
nt_trans 137..397 CDD:294020 110/284 (39%)
Anticodon_Ia_like 436..594 CDD:299868 55/158 (35%)
rars2NP_956911.1 argS 59..597 CDD:234964 195/559 (35%)
ArgRS_core 126..408 CDD:185675 110/285 (39%)
Anticodon_Ia_like 445..597 CDD:299868 55/158 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577402
Domainoid 1 1.000 62 1.000 Domainoid score I10353
eggNOG 1 0.900 - - E1_COG0018
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5707
Inparanoid 1 1.050 304 1.000 Inparanoid score I2635
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 1 1.000 - - FOG0004604
OrthoInspector 1 1.000 - - oto39311
orthoMCL 1 0.900 - - OOG6_100350
Panther 1 1.100 - - LDO PTHR11956
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1455
SonicParanoid 1 1.000 - - X3222
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

Return to query results.
Submit another query.