DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS-m and rars1

DIOPT Version :9

Sequence 1:NP_001262351.1 Gene:ArgRS-m / 40929 FlyBaseID:FBgn0037526 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_956342.1 Gene:rars1 / 337070 ZFINID:ZDB-GENE-030131-9014 Length:661 Species:Danio rerio


Alignment Length:653 Identity:176/653 - (26%)
Similarity:287/653 - (43%) Gaps:108/653 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LKELTE-------RMIRLRQAICEQLPHLKNACYALEVPVKKQQL----QNSRRPTVE----WIL 66
            |.||.|       |:..|::::.|::.|  |....|.:....||:    .:|..|.:|    .:.
Zfish    42 LDELREENSRLKYRLNILKRSLQEEMNH--NGKTMLNINQLLQQIFGEAISSAYPDLENPPLSVT 104

  Fly    67 P------------SAFAQQEVELLDSLKKRRFEAYVENVRIVPS---------AGRSAAKIEFQL 110
            |            ||.|..::.....||....|...:.|:.:|:         ||.....:..: 
Zfish   105 PSQQAKFGDYQCNSAMAMSQMMKAKGLKVSPREIAEKIVQNIPNNDLIEKTEIAGPGFINVHLK- 168

  Fly   111 QPQVFVEQLLQTKEI-ALHPSPF-AAEHIVVEYSSPNIAKPFHVGHLRSTIIGNVLANLHEHLGY 173
              :.||.:||....: .:.|.|. ..:.::|::|||||||..|||||||||||:.:..|.|.|||
Zfish   169 --RNFVSKLLSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFLGY 231

  Fly   174 RTTRLNYLGDWGTQFGLLVLGVQ-----LLNVSDKEMQLSPIETLYKSYVAANKAAEQRPEIAQQ 233
            ...|||::||||||||:|:..:|     .|:||      .||..|...|..:.|..::..|..::
Zfish   232 EVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVS------PPIGDLQAFYKESKKRFDEDEEFKKR 290

  Fly   234 ARDLFAALEGGTDKSMAKKWQQYRNYTIEDLSKVYNRLGVHFDSYEWESQYSQQQIQDVLDKLRS 298
            |......|: ..:....|.|....:.:.::..||||.|.:...  |....|.|..:..|:.:...
Zfish   291 AYKCVVKLQ-SKEADFIKAWNLICDVSRKEFQKVYNCLDISIK--ERGESYYQDMMTAVVKEFEE 352

  Fly   299 AGLLQPEHDGREIVVVDGRRIP--VIKSNGSTLYLARDIAALLERLSRFQFSRLLYVVDNGQADH 361
            .||::.: :||:||...|:.||  ::||:|...|...|:||:..||...:...::||.|:|||.|
Zfish   353 KGLVEVD-EGRKIVFAPGQSIPLTIVKSDGGYTYDTSDLAAIRNRLFDEKADIIIYVTDSGQAMH 416

  Fly   362 FNALFKTTAAL---DDRLSLEQLQHVKFGRIYG-----MSTRQGKAIFLKDVLDE----ARDIMR 414
            |..:|.....:   |.:::  :::|..||.:.|     ..||.|..:.|.|:|:|    :.|.::
Zfish   417 FQVIFAAAQLIGWYDPKVT--RVEHAGFGVVLGEDKKKFKTRSGDTVRLMDLLEEGLKRSMDKLK 479

  Fly   415 EKRNISATTRENYNLDDEHVCDILGVSAVLVNVLKQRRQRDHEFSWQQALQVNGDTGIKLQYTHC 479
            ||......|.|..    |.....:....:....|...|..|:.||:.:.|...|:|...|.|...
Zfish   480 EKERDKVLTPEEL----EKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRGNTAAYLLYAFT 540

  Fly   480 RLHSL--LDNFR-----------DVDLDDIKPDWKHFSTEPADALDLLYALARFDQSVWQSKEQL 531
            |:.|:  |.|.:           ||.||..| :||           |...:.||.:.:.:..:.|
Zfish   541 RIRSIARLANIQEAALRKAAETTDVILDHEK-EWK-----------LGKCILRFPEILQKITDDL 593

  Fly   532 EACVLVNYLFGLCNATSQALKRL----PVKQESSLEK-QLQRLLLFHAAKKTLRHGMELLGLRPL 591
            ....|.:||:.|....::.....    ..:|...:.| .:.|:||..|....:..|.::||:.|:
Zfish   594 LLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCEATAAVMAKGFDILGINPV 658

  Fly   592 NQM 594
            .:|
Zfish   659 QRM 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRS-mNP_001262351.1 ArgS 67..594 CDD:223097 160/586 (27%)
nt_trans 137..397 CDD:294020 93/274 (34%)
Anticodon_Ia_like 436..594 CDD:299868 39/175 (22%)
rars1NP_956342.1 MreC <5..>58 CDD:302802 5/15 (33%)
PLN02286 79..661 CDD:215160 165/612 (27%)
Arg_tRNA_synt_N 79..167 CDD:214975 16/87 (18%)
ArgRS_core 194..458 CDD:185675 93/275 (34%)
Anticodon_Ia_like 497..661 CDD:299868 39/175 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0018
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100350
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1455
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.760

Return to query results.
Submit another query.