DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS-m and rars-1

DIOPT Version :9

Sequence 1:NP_001262351.1 Gene:ArgRS-m / 40929 FlyBaseID:FBgn0037526 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001022551.1 Gene:rars-1 / 175659 WormBaseID:WBGene00004679 Length:713 Species:Caenorhabditis elegans


Alignment Length:541 Identity:155/541 - (28%)
Similarity:251/541 - (46%) Gaps:78/541 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 KIEF----QLQPQVFVEQLLQTKEIALHPSPFAAE----------HIVVEYSSPNIAKPFHVGHL 155
            ||:|    .:.|..|:...|.|..:....|..|:|          .::|::|||||||..|||||
 Worm   200 KIDFVEKIDVMPAGFINIFLNTDYLRRQISLLASEGVKLPKLTRKRVLVDFSSPNIAKEMHVGHL 264

  Fly   156 RSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLV--LGVQLLNVSDKEMQLSPIETLYKSYV 218
            ||||||:.:..|.|.:|:...|:|::||||||||:|:  |..:..:...|...:|.::..||.  
 Worm   265 RSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFYKE-- 327

  Fly   219 AANKAAEQRPEIAQQARDLFAALEGGTDKSMAKKWQQYRNYTIEDLSKVYNRLGVHFDSYE---- 279
             :.|..::..:..::|.:....|: ..|..:.|.|.     ||.|:||.||::..::...:    
 Worm   328 -SKKRFDEDEQFKKRAYEYVVKLQ-SHDGDIVKAWN-----TICDVSKKYNQIVYNYLDIKIKDV 385

  Fly   280 WESQYSQQQIQDVL-------DKLRSAGLLQPEHDGREIVVVDGRRIP--VIKSNGSTLYLARDI 335
            .||.|..:.|:.|.       |.||       |.|||:|:...|..||  |:||:|...|...|:
 Worm   386 GESFYQDKMIELVKWVKTNKPDMLR-------EEDGRQIMFPTGCDIPLTVVKSDGGFTYDTSDL 443

  Fly   336 AALLERLSRFQFSRLLYVVDNGQADHFNALFKTTAALD----DRLSLEQLQHVKFGRIYG----- 391
            |||..|:...:....:||||:||:.|...::  .|..|    |. |:::::||.||.:.|     
 Worm   444 AALKYRMLEEKCDWNIYVVDSGQSLHLETVY--AAGRDFGWYDE-SIQRVEHVAFGLVLGDDKKK 505

  Fly   392 MSTRQGKAIFLKDVLDEARDIMREKRNISATTRENYNLDDEHVC--DILGVSAVLVNVLKQRRQR 454
            ..||.|:.:.|.|:|.|.  :.|....:....||....:::.|.  |.:....|....|...|.:
 Worm   506 FKTRSGETVRLLDLLSEG--VKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHTRTQ 568

  Fly   455 DHEFSWQQALQVNGDTGIKLQYTHCRLHSLL--DNFRDVDLDDIKPDWKHFSTEPADALD----- 512
            |:.||:.:.|:..|:|.:.|.|.:.|:.|:.  |..::|||      .|:.::.|...||     
 Worm   569 DYVFSFDRMLEDRGNTAVYLLYAYTRIQSIFEKDEVKNVDL------VKYIASTPTLPLDHPGEF 627

  Fly   513 -LLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQALKRLPVKQESSLEK---QLQRLLLFH 573
             |...|.:....|....:.|....:.:|::.|............|.:....||   .:.||.|..
 Worm   628 KLAKQLLKLSDCVLLVLDSLMLHQMCDYVYQLATLFHDFYNECYVIENKEGEKPFVHMHRLALCD 692

  Fly   574 AAKKTLRHGMELLGLRPLNQM 594
            ..:|.:....::||||.:|:|
 Worm   693 VTRKVMSTCFKILGLREVNKM 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRS-mNP_001262351.1 ArgS 67..594 CDD:223097 154/539 (29%)
nt_trans 137..397 CDD:294020 95/283 (34%)
Anticodon_Ia_like 436..594 CDD:299868 40/168 (24%)
rars-1NP_001022551.1 Arg_tRNA_synt_N 132..219 CDD:214975 5/18 (28%)
PLN02286 133..713 CDD:215160 154/539 (29%)
ArgRS_core 245..511 CDD:185675 95/284 (33%)
Anticodon_Ia_like 550..713 CDD:299868 40/168 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100350
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1455
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.860

Return to query results.
Submit another query.