DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArgRS-m and rars-2

DIOPT Version :9

Sequence 1:NP_001262351.1 Gene:ArgRS-m / 40929 FlyBaseID:FBgn0037526 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_495227.1 Gene:rars-2 / 174023 WormBaseID:WBGene00004680 Length:512 Species:Caenorhabditis elegans


Alignment Length:505 Identity:165/505 - (32%)
Similarity:254/505 - (50%) Gaps:69/505 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 AEHIVVEYSSPNIAKPFHVGHLRSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLL 198
            ::.|||::|||||||.||||:||||:||..:..:...:|...|.:||||||||||.::......:
 Worm    33 SQRIVVDFSSPNIAKQFHVGNLRSTLIGRYVDKVSRVMGNEVTSVNYLGDWGTQFAMIAAFWPQM 97

  Fly   199 NVSDKEM-QLSPIE---TLYKSYVAANKAAEQRPEIAQQARDLFAALEGG---------TDKSMA 250
            ..||:.. .||.:|   .|...||.|||..:...|...:..:.|.|:|..         .|:.| 
 Worm    98 RPSDQYWNSLSDVEKIKQLTDCYVVANKNMKIDEEFRAKVYETFVAMEKAVTGEQENWKNDEHM- 161

  Fly   251 KKWQQYRNYTIEDLSKVYNRLGVHFDSYEWES---QYSQQQIQDVLDKLRSAGLLQPEHDGREIV 312
            ..|||.::.:...||:.||...|.||.:..||   :.:.|..|:::||    |..: :.||:.|.
 Worm   162 MLWQQIKDISKNHLSEFYNLFDVKFDKWLCESSQVRKAHQYAQELIDK----GFTE-DLDGKTIF 221

  Fly   313 VV----------DGRRIPVI-KSNGSTLYLARDIAALLERLSRFQFSRLLYVVDNGQADHFNALF 366
            .:          ||....|: ||:.|:|||.|:|||:|:|.:.||..|.|||||..|..||.|| 
 Worm   222 RLRDIDTEKKQSDGVNYAVLRKSDMSSLYLTREIAAILDRDAMFQADRYLYVVDRAQRQHFKAL- 285

  Fly   367 KTTAALDDRLSL-EQLQHVKFGRIYGMSTRQGKAIFLKDVLDEARDIMREKRNISATTRENYNLD 430
            |.......|..| .:::|:::||:.|:|||.|:...:.:::::.|::..:....|.|    :.:|
 Worm   286 KVILEKIGRSDLASKIEHIQYGRVRGLSTRNGRTEAVGEIIEKGRELALQFMKSSKT----FCMD 346

  Fly   431 ---DEHVCDILGVSAVLVNVLKQRRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLD------ 486
               :..:.::|.:|.|:.|.||:.|..::|||:|.|..:|.:..:.||..|.||.|:.:      
 Worm   347 PAVESDIANVLSLSTVVFNELKRARNSEYEFSFQNAFALNQNNALALQMKHSRLSSIEEKHQHLF 411

  Fly   487 -------NFRDVDLDDIKPDWKHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLC 544
                   .|.|.|.:|             |...|:..|...:::|..|.|:||||.|...|..:.
 Worm   412 PQIEACTKFNDFDTND-------------DVKRLIRLLNDLEKAVELSAEKLEACQLTVQLIHVA 463

  Fly   545 NATSQALKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQM 594
            .|.....|:|.||.:.. |..:.|||||.|.:..|..|:..||:.|...|
 Worm   464 AAAGSVQKQLRVKDQPD-EVAVPRLLLFSAVRNVLAEGLRFLGITPARSM 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRS-mNP_001262351.1 ArgS 67..594 CDD:223097 164/503 (33%)
nt_trans 137..397 CDD:294020 107/287 (37%)
Anticodon_Ia_like 436..594 CDD:299868 52/170 (31%)
rars-2NP_495227.1 ArgS 28..512 CDD:223097 164/503 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 173 1.000 Domainoid score I2212
eggNOG 1 0.900 - - E1_COG0018
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 222 1.000 Inparanoid score I2269
Isobase 1 0.950 - 0 Normalized mean entropy S1330
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 1 1.000 - - FOG0004604
OrthoInspector 1 1.000 - - oto20573
orthoMCL 1 0.900 - - OOG6_100350
Panther 1 1.100 - - LDO PTHR11956
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1455
SonicParanoid 1 1.000 - - X3222
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.820

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