DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and tubb4b

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_012825219.1 Gene:tubb4b / 779904 XenbaseID:XB-GENE-969447 Length:474 Species:Xenopus tropicalis


Alignment Length:485 Identity:186/485 - (38%)
Similarity:273/485 - (56%) Gaps:50/485 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDD----SFNTFFSE-TG--- 57
            |||.:.:..||.|.|||...||:...||||.|.|      |..|..|    ..|.:::| ||   
 Frog     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEATGEWE 59

  Fly    58 -------------------------AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE 97
                                     .||:|||||.|||||..:|.||:|.:.|:|.|:..:.|:.
 Frog    60 CRFCSVGGCWSSRIPGMPYILLPFAGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS 124

  Fly    98 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYG 162
            .|.||:|:||||.|.|:||.|||.:||.|:.|..||||.:.||.|||||||..:||:.::..:|.
 Frog   125 GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP 189

  Fly   163 KKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNL 227
            .:....|:|.|:|:||..||||||:.|:.|..:|::|..:.:||||:||||.|.|.:..|||.:|
 Frog   190 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDL 254

  Fly   228 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 292
            |.|:...:|.:|..|||.|.||.||.:...|:||:||:||.:..:||:.|.....:..|:|.|:|
 Frog   255 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 319

  Fly   293 NACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
            ...|:..|.|...|||||:|:....::||.:..|:|:..:..::.|.:..||:|.|...|..:..
 Frog   320 QQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCD 384

  Fly   358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
            .||        ..::.:...:.|:|||.|.:.|:..:|..|:.::||:|||.||||:|.||:||.
 Frog   385 IPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAE 441

  Fly   423 EDLAALEKDYEEVGMDSGDGEG---EGAEE 449
            .::..|..:|::....:.:.||   ||.||
 Frog   442 SNMNDLVSEYQQYQDATAEEEGEFEEGEEE 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 180/470 (38%)
tubb4bXP_012825219.1 PLN00220 1..459 CDD:215107 180/471 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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