DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and Tube1

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_082282.1 Gene:Tube1 / 71924 MGIID:1919174 Length:475 Species:Mus musculus


Alignment Length:483 Identity:149/483 - (30%)
Similarity:240/483 - (49%) Gaps:74/483 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSE-----TGAGK 60
            |.:.:.:.|||.|.|||...|:|...||.        :....|..||:.::||..     .|.|.
Mouse     1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGG 57

  Fly    61 HV---------PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 116
            .:         .|||.:|:|..||:|:..|..|.:|..:||||....:.||:|.||...|....:
Mouse    58 SISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYRE 122

  Fly   117 LVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAV 181
            .:|:::||.|:||..||.|.|.||.|||||||..:.|::.|..::.:..:...||||:.: ...:
Mouse   123 QILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVI 186

  Fly   182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI--------------------------- 219
            ..||||:|......||:||...:||::::||..: :|:                           
Mouse   187 TSPYNSMLAMKELNEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNMGAVKKH 250

  Fly   220 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF------PLVTYAPVISA 278
            .:..:..:|.::..::.|:|:|.||:|:||:||.|...||||:|::|:      ||.|.|.|...
Mouse   251 HKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIP 315

  Fly   279 EKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 343
            .:...:..|.|      |...:|:::.||||..|:||.::.||:|...|:...|..:|.  .:||
Mouse   316 PRRLDQMFSDA------FSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQF 372

  Fly   344 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
            |.|...|:|..:...||.    |.    ..::..|:|.|.:...:..|..:|..:|.|:|.:|.|
Mouse   373 VSWNQEGWKTSLCSVPPV----GH----SHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHY 429

  Fly   409 VG-EGMEEGEFSEAREDLAALEKDYEEV 435
            :. :||||..|:||...|:||.::|.::
Mouse   430 LQVDGMEESTFTEAVSSLSALIQEYSDL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 149/483 (31%)
Tube1NP_082282.1 epsilon_tubulin 2..457 CDD:276959 148/480 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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