DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alphaTub84D and Tubb1

DIOPT Version :10

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001418658.1 Gene:Tubb1 / 679312 RGDID:1589557 Length:452 Species:Rattus norvegicus


Alignment Length:459 Identity:183/459 - (39%)
Similarity:267/459 - (58%) Gaps:20/459 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRA 65
            |||.:.|.:||.|.|||...||:...||||...|.......:  ..:..:.:::|....|:||||
  Rat     1 MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSAL--QLERISVYYNEAYGKKYVPRA 63

  Fly    66 VFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCT 130
            |.|||||..:|.:|:.....||.|:..:.|...|.||:|:||||.|.|:::.|:|.:|:.::.|.
  Rat    64 VLVDLEPGTMDSIRSSRLGILFQPDSFVHGNSGAGNNWAKGHYTEGAELIETVMDVVRRESESCD 128

  Fly   131 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTL 195
            .||||.|.||.|||||||..:|||.::..:|..:....|:|.|:|:||..||||||::|:.|..:
  Rat   129 CLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVVEPYNAVLSIHQLI 193

  Fly   196 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
            |::|..|.:||||:||||.|.|.:..|||.:||.|:...:|.||.||||.|.||.||.:...|:|
  Rat   194 ENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNADLRKLAVNMV 258

  Fly   261 PYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVP 325
            |:||:||.:..:||:.:.....:..|||||:|...|:..|.|...|||.|:|:....::||.:..
  Rat   259 PFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIMAACDPRRGRYLTVACIFRGKMST 323

  Fly   326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
            |:|:..:.:|:|:.:..||:|.|...||.:...||        ..:..|...|.|.|||.|.:.|
  Rat   324 KEVDQQLLSIQTRNSNCFVEWIPNNVKVAVCDIPP--------RGLNMAATFLGNNTAIQELFTR 380

  Fly   391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE-----VGM----DSGDGEGE- 445
            :...|..|:.:|||||||..|||:..||.||..|:..|..:|::     .|:    :.|:.|.| 
  Rat   381 VSEHFSAMFRRRAFVHWYTSEGMDISEFGEAEADILDLVSEYQQFQDVRAGLEDIEEGGEEEAEM 445

  Fly   446 GAEE 449
            |||:
  Rat   446 GAED 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 177/446 (40%)
Tubb1NP_001418658.1 PTZ00010 1..428 CDD:240228 176/436 (40%)

Return to query results.
Submit another query.