DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and Tubb1

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_003749686.1 Gene:Tubb1 / 679312 RGDID:1589557 Length:452 Species:Rattus norvegicus


Alignment Length:459 Identity:183/459 - (39%)
Similarity:267/459 - (58%) Gaps:20/459 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRA 65
            |||.:.|.:||.|.|||...||:...||||...|.......:  ..:..:.:::|....|:||||
  Rat     1 MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSAL--QLERISVYYNEAYGKKYVPRA 63

  Fly    66 VFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCT 130
            |.|||||..:|.:|:.....||.|:..:.|...|.||:|:||||.|.|:::.|:|.:|:.::.|.
  Rat    64 VLVDLEPGTMDSIRSSRLGILFQPDSFVHGNSGAGNNWAKGHYTEGAELIETVMDVVRRESESCD 128

  Fly   131 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTL 195
            .||||.|.||.|||||||..:|||.::..:|..:....|:|.|:|:||..||||||::|:.|..:
  Rat   129 CLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVVEPYNAVLSIHQLI 193

  Fly   196 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
            |::|..|.:||||:||||.|.|.:..|||.:||.|:...:|.||.||||.|.||.||.:...|:|
  Rat   194 ENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNADLRKLAVNMV 258

  Fly   261 PYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVP 325
            |:||:||.:..:||:.:.....:..|||||:|...|:..|.|...|||.|:|:....::||.:..
  Rat   259 PFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIMAACDPRRGRYLTVACIFRGKMST 323

  Fly   326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
            |:|:..:.:|:|:.:..||:|.|...||.:...||        ..:..|...|.|.|||.|.:.|
  Rat   324 KEVDQQLLSIQTRNSNCFVEWIPNNVKVAVCDIPP--------RGLNMAATFLGNNTAIQELFTR 380

  Fly   391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE-----VGM----DSGDGEGE- 445
            :...|..|:.:|||||||..|||:..||.||..|:..|..:|::     .|:    :.|:.|.| 
  Rat   381 VSEHFSAMFRRRAFVHWYTSEGMDISEFGEAEADILDLVSEYQQFQDVRAGLEDIEEGGEEEAEM 445

  Fly   446 GAEE 449
            |||:
  Rat   446 GAED 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 177/446 (40%)
Tubb1XP_003749686.1 PTZ00010 1..428 CDD:240228 176/436 (40%)
beta_tubulin 2..426 CDD:276956 175/433 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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