DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and tubd1

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001002093.1 Gene:tubd1 / 415183 ZFINID:ZDB-GENE-040625-73 Length:446 Species:Danio rerio


Alignment Length:466 Identity:113/466 - (24%)
Similarity:207/466 - (44%) Gaps:71/466 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVD 69
            :|:.:||.|.|||:   ||:.:   |..|...|:.|......|  ..||.:..||:.|.|:|.||
Zfish     4 VSLQLGQCGNQIGH---ELFSV---ISDDSNGPNRKKYKQCSD--ERFFYQNSAGELVARSVLVD 60

  Fly    70 LEPTVVDEV-----RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 129
            :||.|:.:.     ::|.:|  :..:...:.|:.:.||:|.|....|....:.|.|.:|...::|
Zfish    61 MEPKVISQALAKASKSGRWR--YGDKAHFSQKQGSGNNWANGFCVHGPRHKEDVEDLVRMEVERC 123

  Fly   130 TGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYP--APQVSTAVVEPYNSILTTH 192
            ..|.|.....|..||||||..:.:.:||...|.:...|....:|  |.:|   :|:.|||:||..
Zfish   124 DRLAGIFTMMSVAGGTGSGVGTYITQRLRDLYPQSFILNQVTWPYGAGEV---IVQNYNSVLTLS 185

  Fly   193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF----DGALNVDLT 253
            ...:.||...:.:|:.::.||.:.::|:..:.:::|::|...::|:...:..    |......:.
Zfish   186 HLYQLSDAILVHENDTVHKICSQLMNIKHISISDINKVISHQLASVLQPVYTAHSPDYYSRNPIG 250

  Fly   254 EFQTNLVPYPRIHFPLVTYAPVISAEK-AYH-----------EQLSVA------------EITNA 294
            |..|:||.:|......:...|.:|:.. ||.           .|:.:|            .:.:.
Zfish   251 ELLTSLVCHPEYKLLSLCNIPQMSSTSLAYSVFNWPGLLKHLRQMLIASARMEEGIDWTVNVPSV 315

  Fly   295 CFEPANQMVKVDPRHGKY---MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW--CPTGFKVG 354
            ....|..:..:  ||..:   :|..::.||    |||:.|: |...|..:.:|.|  ....|.  
Zfish   316 VLSGAESVTNI--RHKSFNSSLANLLILRG----KDVSTAV-TDGFKDPLLYVPWLKAENSFS-- 371

  Fly   355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
             .:..|....|     .:::..::||:.::.:....:..|...|:|.||::|.|...|:.|.:|.
Zfish   372 -TWSSPIPFNG-----YEKSATLVSNSQSLLKPLDNIVRKAWNMFASRAYIHQYTKFGISEEDFL 430

  Fly   420 EAREDLAALEK 430
            ::   ..|||:
Zfish   431 DS---FTALEQ 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 113/466 (24%)
tubd1NP_001002093.1 delta_zeta_tubulin-like 2..445 CDD:276958 113/466 (24%)
COG5023 3..443 CDD:227356 113/466 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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