DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and Tube1

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_006256590.1 Gene:Tube1 / 361856 RGDID:1306048 Length:475 Species:Rattus norvegicus


Alignment Length:483 Identity:150/483 - (31%)
Similarity:239/483 - (49%) Gaps:74/483 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF------------ 53
            |.:.:.:.|||.|.|||...|:|...||.        :....|..||:.::||            
  Rat     1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDCG 57

  Fly    54 --SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 116
              |:........|||.:|:|..||:|:..|..|.:|..:||||....:.||:|.||...|....:
  Rat    58 SISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYRE 122

  Fly   117 LVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAV 181
            .:|:::||.|:.|..||.|.|.||.|||||||..:.|::.|..::.:..:...||||:.: ...:
  Rat   123 QILEKLRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVI 186

  Fly   182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI--------------------------- 219
            ..||||:|......||:||...:||::::||..: :|:                           
  Rat   187 TSPYNSMLAMKELSEHADCVLPIDNQSLFDIISK-IDLVVNSGKLGSAVKPKSLITSNTGPVKKR 250

  Fly   220 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF------PLVTYAPVISA 278
            .:..:..:|.::..::.|:|:|.||:|:||:||.|...||||:|::|:      ||.|.|.|...
  Rat   251 HKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIP 315

  Fly   279 EKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 343
            .:...:..|.|      |...:|:::.|||||.|:||.::.||:|...|:...|..:|.  .:||
  Rat   316 PRRLDQMFSDA------FSKGHQLLQADPRHGLYLACALIVRGEVQISDLRRNIERLKP--ALQF 372

  Fly   344 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
            |.|...|:|..:...||...|...||        |:|.|.:...:..|..:|..:|.|:|.:|.|
  Rat   373 VSWNQEGWKTSLCSVPPVGHPHSLLA--------LANNTCVKPTFLELRERFMRLYKKKAHLHHY 429

  Fly   409 VG-EGMEEGEFSEAREDLAALEKDYEEV 435
            :. :||||..|:||...|:||.::|.::
  Rat   430 LQVDGMEESTFTEAVSSLSALIQEYSDL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 150/483 (31%)
Tube1XP_006256590.1 PTZ00387 1..470 CDD:240395 150/483 (31%)
epsilon_tubulin 2..457 CDD:276959 149/480 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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