DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaTub84D and tube1

DIOPT Version :9

Sequence 1:NP_524264.1 Gene:alphaTub84D / 40904 FlyBaseID:FBgn0003885 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001016136.1 Gene:tube1 / 100488997 XenbaseID:XB-GENE-492734 Length:472 Species:Xenopus tropicalis


Alignment Length:486 Identity:148/486 - (30%)
Similarity:243/486 - (50%) Gaps:72/486 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFF------SETGA- 58
            |.:.|.:.|||.|.|||...|:|...||.        |....|..|::..:||      :|.|. 
 Frog     1 MTQSIVVQVGQCGNQIGCRFWDLALREHA--------SVNKKGIFDEALCSFFRNVDTRAEAGGA 57

  Fly    59 ----GKHV---PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 116
                ||..   .|||.:|:|..||:|:..|..|.||..:||||....:.||:|.||...|.:..:
 Frog    58 DAQRGKICSLKARAVLIDMEEGVVNEILQGPLRDLFDSKQLITDVSGSGNNWAVGHKLYGGQYRE 122

  Fly   117 LVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAV 181
            .:::.:|:.|:||..||.|.:.||.|||||||..:.::..|..::.:..:...:|||:.: ...:
 Frog   123 HIVENLRRTAEQCDCLQCFFVIHSMGGGTGSGLGTFVLNVLEEEFPEVYRFVTSVYPSAE-DDVI 186

  Fly   182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR-----------NL--------------DIER 221
            ..||||:|......||:||...::|:|:.||..:           |:              :.|:
 Frog   187 TSPYNSVLAMKELTEHADCVLPIENQALVDIVNKINQMANTGKLGNVKSNSLLTSNKGGIKENEK 251

  Fly   222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF------PLVTYAPVISAEK 280
            | :..:|.::..::.::|:|.||:|:||:||.|...||||:|::|:      ||.|.|.|....:
 Frog   252 P-FDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLTSSLTPLYTLADVNVPTR 315

  Fly   281 AYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
            ...:..|.|      |...:|:::.||:|..|:||.::.||:|...|:...|..:|.  .:|||.
 Frog   316 RLDQMFSDA------FSKDHQLIRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--FLQFVS 372

  Fly   346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
            |...|:|.|:...||.    |.    ..::..|:|.|.:...:..|..:|..:|.|:|.:|.|:.
 Frog   373 WNQEGWKTGLCSVPPV----GH----SHSLLALANNTCVKPTFIELRDRFSKLYRKKAHLHHYMQ 429

  Fly   411 -EGMEEGEFSEAREDLAALEKDYEEVGMDSG 440
             :|||:..|:||...|::|.::|.::....|
 Frog   430 VDGMEQHCFTEAISSLSSLIEEYSQLDASKG 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaTub84DNP_524264.1 PTZ00335 1..439 CDD:185562 147/483 (30%)
tube1NP_001016136.1 PTZ00387 1..456 CDD:240395 147/480 (31%)
epsilon_tubulin 2..455 CDD:276959 146/478 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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