DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl2 and AT3G61560

DIOPT Version :9

Sequence 1:NP_001246964.1 Gene:Rtnl2 / 40903 FlyBaseID:FBgn0015831 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001319815.1 Gene:AT3G61560 / 825329 AraportID:AT3G61560 Length:253 Species:Arabidopsis thaliana


Alignment Length:174 Identity:48/174 - (27%)
Similarity:79/174 - (45%) Gaps:25/174 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NLLLWRN---SRKTLIVFTGILLLLLDVMVHSVISVISMVGITVLIAAIGHRLLVQFWSIWKKDE 82
            ::.|||:   |...|.|.|.| .:|.:::.:..:|::..:.|..|.|..   ||....:...|..
plant    70 DVFLWRDKKLSASVLGVATAI-WVLFELVEYHFLSLVCHILIFALAALF---LLSNAHAFMNKTP 130

  Fly    83 NKDQILRFYPHPKIEIPREETLYLAGKAVSHIN--LILNRMIELLLVEKWEDSLKFLVLLCG--- 142
            .|        .|:|.|..|..|.:.....:.:|  .::.|.|.|     ..|..|||:::.|   
plant   131 PK--------IPEIHIKEEHFLMIVSALRNELNQAFVILRSIAL-----GRDLKKFLMVVFGLWI 182

  Fly   143 INLLGDCFNGLTLLIFGHLFIFTVPKLYESYKPFVDVQIRKFRK 186
            |:::|:.||.|||:....:.:.|||.|||.::..||....|..|
plant   183 ISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLK 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl2NP_001246964.1 Reticulon 21..183 CDD:280592 46/169 (27%)
AT3G61560NP_001319815.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I3611
eggNOG 1 0.900 - - E1_KOG1792
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I2602
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_110713
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.760

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