DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl2 and rtn4

DIOPT Version :10

Sequence 1:NP_524263.2 Gene:Rtnl2 / 40903 FlyBaseID:FBgn0015831 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001161159.1 Gene:rtn4 / 677732 XenbaseID:XB-GENE-1012585 Length:1063 Species:Xenopus tropicalis


Alignment Length:177 Identity:56/177 - (31%)
Similarity:92/177 - (51%) Gaps:21/177 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SSQIFMDLKNLLLWRNSRKTLIVFTGILLLLLDVMVHSVISVISMVGITVLIAAIGHRL---LVQ 73
            ||.....:.:|:.||:.:|:..||...|.|||.:.|.|::||::.:.:.:|..:|..|:   ::|
 Frog   869 SSDFIKSVVDLVYWRDIKKSGAVFGASLFLLLSLSVFSIVSVLAYIALALLSVSISFRIYRGVLQ 933

  Fly    74 FWSIWKKDENKDQILRFYPHP-------KIEIPREETLYLAGKAVSHINLILNRMIELLLVEKWE 131
              :|.|.||.         ||       .:.:|.:........|::|:|..:..:..|.|||...
 Frog   934 --AIQKSDEG---------HPFRSILESNLAVPEDLVQKYCNVALNHVNCTVKELRRLFLVEDLV 987

  Fly   132 DSLKFLVLLCGINLLGDCFNGLTLLIFGHLFIFTVPKLYESYKPFVD 178
            |||||.||:.....:|..||||||||...:.:|::|.:||.::..||
 Frog   988 DSLKFAVLMWVFTYIGALFNGLTLLILALISLFSIPVIYERHQTQVD 1034

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl2NP_524263.2 Reticulon 21..184 CDD:460562 54/168 (32%)
rtn4NP_001161159.1 Reticulon 876..1040 CDD:460562 54/170 (32%)

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