DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc84D and Ube2d4

DIOPT Version :9

Sequence 1:NP_524260.1 Gene:Ubc84D / 40900 FlyBaseID:FBgn0017456 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_112263.1 Gene:Ube2d4 / 79435 RGDID:69425 Length:147 Species:Rattus norvegicus


Alignment Length:150 Identity:53/150 - (35%)
Similarity:89/150 - (59%) Gaps:9/150 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ATRRLTRELSDLVE---AKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPF 63
            |.:|:.:||:||.:   |:.|.    ....|.:..|...:: |..:||..|||.:.|:||.:|||
  Rat     2 ALKRIHKELNDLAQDPPAQCSA----GPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPF 62

  Fly    64 MPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEE 128
            .|||:.|.|:||||||:..|.:||.|:.: .|.|.....:||.::.:::.:|.|:.||..::|:.
  Rat    63 KPPKVEFTTRIYHPNVNSNGSICLDILRS-QWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQI 126

  Fly   129 FVREHKKFMKTAEEFTKKNA 148
            :..:..|:.:||.|:|:|.|
  Rat   127 YKTDRDKYNRTAREWTQKYA 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc84DNP_524260.1 COG5078 1..150 CDD:227410 52/149 (35%)
UBCc 6..149 CDD:214562 51/146 (35%)
Ube2d4NP_112263.1 UBCc 1..146 CDD:412187 52/148 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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