DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc84D and ube2d1a

DIOPT Version :9

Sequence 1:NP_524260.1 Gene:Ubc84D / 40900 FlyBaseID:FBgn0017456 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_957404.1 Gene:ube2d1a / 394085 ZFINID:ZDB-GENE-040426-1609 Length:147 Species:Danio rerio


Alignment Length:147 Identity:52/147 - (35%)
Similarity:82/147 - (55%) Gaps:3/147 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPP 66
            |.:|:.:||.||.....|.. :.....|.|..|...:: |..:||..|.|.:.|:||..|||.||
Zfish     2 ALKRIQKELQDLQRDPPSQC-SAGPLGEDLFHWQATIMGPGDSPYQGGVFFLTIHFPTDYPFKPP 65

  Fly    67 KILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVR 131
            |:.|.|||||||::..|.:||.|:.: .|.|.....:||.::.:::.:|.|:.||..|:|..:..
Zfish    66 KVAFTTKIYHPNINSNGSICLDILRS-QWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKS 129

  Fly   132 EHKKFMKTAEEFTKKNA 148
            :..|:.:.|.|:|:|.|
Zfish   130 DKDKYNRLAREWTQKYA 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc84DNP_524260.1 COG5078 1..150 CDD:227410 52/147 (35%)
UBCc 6..149 CDD:214562 51/144 (35%)
ube2d1aNP_957404.1 COG5078 1..147 CDD:227410 52/147 (35%)
UBCc 1..146 CDD:294101 51/145 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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